Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1557 104 2e-17 seq2872 100 3e-16 seq93 95.1 1e-14 seq2298 91.5 1e-13 >seq1557 Length=337913 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| || | | ||| || | |||| || || || || ||||||||||| || || Sbjct 14393 CCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCC 14334 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| ||||| ||||||||| | || ||||| ||||| || || || Sbjct 14333 ATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGG 14274 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || || ||||| || ||||| Sbjct 14273 ATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACA 14214 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | || |||||||||| || || |||||||||||||| Sbjct 14213 TCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCAT 14167 >seq2872 Length=49360 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || || ||||||||||| || || | ||||| | ||||| ||||| Sbjct 1923 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGT 1864 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||||||| | || ||||| ||||| || || || || || || || || || || || Sbjct 1863 TTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTC 1804 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || ||||| || ||||| || | ||| | || ||||||||| Sbjct 1803 GTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGTC 1744 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || |||||||||||||| Sbjct 1743 AGTGTCTTCACGAAAATTTGCAT 1721 >seq93 Length=214751 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| || | | ||| || | |||| || || || || ||||||||||| || || Sbjct 184789 CCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCC 184848 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| ||||| ||||||||| | || ||||| ||||| || || || Sbjct 184849 ATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGG 184908 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || || ||||| || ||||| Sbjct 184909 ATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTTTCCACC 184968 Query 64397 TCTACAGTTA-CGGTCTTGCCGGTCAAAGTTTTTACG-AAAATTTGCAT 64443 || | ||| | || | |||||||||| || || ||| ||||||||||| Sbjct 184969 TCCAAAGTGATCGTTTTTGCCGGTCAGTGTCTTCACGAAAAATTTGCAT 185017 >seq2298 Length=272061 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 || || |||||||||||||| || | | | | ||| |||||||||||| || | ||| Sbjct 213131 GACTCCTTTTGAATGTTGTAGTCCACCATGCTTCGCATGTCTTCAAGCTGTTTCCTTGCA 213072 Query 64310 TAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 | || |||||| | || | ||||| |||||||| ||||||||||| ||| || Sbjct 213071 AAGATCAGCCGCAGTTGCTTCTT-GGAATGCCTTCTTTGTCTTGTATTTTGGCCTTCACG 213013 Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429 ||| | || || | || || || || | ||| | |||||| ||||| | || || Sbjct 213012 TTCTCGATAGTGTCGCTAGCCTCAACCTCCAGAGTGATGGTCTTTCCGGTAAGCGTCTTC 212953 Query 64430 ACGAAAATTT 64439 |||||||||| Sbjct 212952 ACGAAAATTT 212943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499601874266120