Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq2386 86.0 9e-12 >seq2386 Length=1330 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 40967 CTGCCCTTCATCCATCCGCACGGCGTCGCGTTGATGCCGGACGCGCACGCAGGCATCGGC 41026 ||||| ||||| | || ||||| || | |||||||| | || || || ||||| Sbjct 1300 CTGCCATTCATAGCACGTCAAGGCGTAGCATGCATGCCGGATGTCCATGCTGGTATCGGT 1241 Query 41027 AGCACGGTAGGATCGGTGATCGCTACG--CAAGGTGCCATCATTCCGGCGGCGGTGGGCG 41084 ||||| || || | || || || ||| ||||| |||| || ||||| || ||||||| Sbjct 1240 AGCACTGTCGGCACAGTCATTGCCACGGACAAGG--CCATTATCCCGGCTGCTGTGGGCG 1183 Query 41085 TGGACATCGGCTGCGGCATGGTGGC 41109 | ||||||||||| |||||||| || Sbjct 1182 TTGACATCGGCTGTGGCATGGTTGC 1158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739824434372200