Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq1544 120 3e-22 seq962 93.3 4e-14 >seq1544 Length=2721 Score = 120 bits (132), Expect = 3e-22 Identities = 167/228 (73%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 162025 ATCTACGGCGACAGCATCACGCTCGATCGCGCACAGGCGATCCTGGCCAAC--CTGCAGC 162082 || ||||| || |||||||| || || || ||| | |||||| |||| ||| | Sbjct 882 ATTTACGGTGATAGCATCACTCTGGAACGTGCAGAACAAATCCTG--CAACGTCTGATGG 825 Query 162083 GTCAGGGCTTCGCTGCCAGTAACGTCGTGTTCGGCGTGGGCAGCTACACGTACCAGTACA 162142 | |||||||| ||| ||||| |||||||||| || ||| ||||| |||||||||| Sbjct 824 ATAAGGGCTTCAGTGCTGGTAACATCGTGTTCGGTGTAGGCTCGTACACCTACCAGTACA 765 Query 162143 ACACCCGCGACACGTTCGGTTCAGCAATGAAGGCGACGTGGGCGCAGGTCAACGG-CAAG 162201 ||| || ||||||||||| || || ||||| ||||||| ||||| ||||| ||| Sbjct 764 TCACTCGTGACACGTTCGGCATGGCTATCAAGGCTACGTGGG-ACAGGTGAACGGTGAAG 706 Query 162202 GGCGTGAACCTGTTCAAGGACCCGATCACCGACGACGGGACCAAGAAG 162249 | ||| ||| | || ||||||| |||| |||||| | |||||| Sbjct 705 GTCGT-AACATCCAGAAAGACCCGAAGACCGGCGACGGTATGAAGAAG 659 >seq962 Length=5977 Score = 93.3 bits (102), Expect = 4e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| | ||||||| |||||||||| ||||||||||||||| ||| ||| ||||||||| Sbjct 297 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 238 Query 92675 CCCACTCCCGCCAC 92688 || |||||||| || Sbjct 237 CCTACTCCCGCAAC 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526553158614960