Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2872 98.7 1e-15 seq1557 93.3 4e-14 seq269 91.5 1e-13 seq1281 89.7 5e-13 seq93 86.0 6e-12 >seq2872 Length=49360 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| ||| || || || ||||| ||||| |||| | Sbjct 1914 GACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCA 1855 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || || || || || || || || || || ||||| || | || || || | Sbjct 1854 AAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTC-CTGGATCTTCGTCTTCAC 1796 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || || ||||| | ||||||||| | || | |||||| || ||||| || | Sbjct 1795 GTTG-TCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGTCAGTGTCT 1737 Query 138599 TTACAAAAATCTGCATG 138615 | || ||||| |||||| Sbjct 1736 TCACGAAAATTTGCATG 1720 >seq1557 Length=337913 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| ||| || || || ||||| ||||| |||| | Sbjct 14360 GACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCA 14301 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || || || || || || || || || || ||||| || | || || || | Sbjct 14300 AAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTC-CTGGATCTTCGTCTTCAC 14242 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || || ||||| | |||||| || | || | |||||| || ||||| || | Sbjct 14241 GTTG-TCAACTGTGTCCGAACTCTCCACATCCAAAGTGATCGTTTTGCCGGTCAGTGTCT 14183 Query 138599 TTACAAAAATCTGCATG 138615 | || ||||| |||||| Sbjct 14182 TCACGAAAATTTGCATG 14166 >seq269 Length=200655 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 153586 ATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTAC 153644 |||| || | ||||| || |||| || || || || ||||| || || | || || Sbjct 149908 ATCGGTTAAGCGCAATGGAGGCCAAGTTGCACACAGCGGTCTCATCCGGTGACGAA-TAT 149966 Query 153645 TGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTT 153704 | | ||| |||| ||| | || |||||||||| |||||| ||||||||||| Sbjct 149967 TCAATGATTTCGGTGCACAAATTTGAGCATTTTATGGTGCCCAAGTTTTGCTGATTTGAC 150026 Query 153705 TTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 || |||||||||||||| ||||| | ||||||||| ||||||||| Sbjct 150027 TTCCGATTGCACGCGTCCTTGAACAACATGTACGGCGTGCCGGTCTC 150073 >seq1281 Length=341766 Score = 89.7 bits (98), Expect = 5e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 57294 CACTTTGGCCTCGACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCC 57353 ||| |||||| | || ||||||| |||||||||||||||| ||||||||||||| || || Sbjct 251963 CACATTGGCCACCACATTGCCCAGGTCGCCGACGTGCCGCTCGGCCGCGTTGGGCGCCCC 251904 Query 57354 GTGTTCGCTGCCGGTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGC 57400 ||| ||||| ||||| |||||| | ||||| | | | |||| Sbjct 251903 GTGGCGTTTGCCGTGCGGGTTGAAGTGCGCACCCGCGGCCATACAGC 251857 >seq93 Length=214751 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| ||| || || || ||||| ||||| |||| | Sbjct 184822 GACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCA 184881 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || || || || || || || || || || ||||| || | || || || | Sbjct 184882 AAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTC-CTGGATCTTCGTCTTCAC 184940 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG-TTTTACCAGTCAGAGTT 138597 ||| || || ||||| | |||||||| | || | || |||| || ||||| || Sbjct 184941 GTTG-TCAACTGTGTCCGAACTTTCCACCTCCAAAGTGATCGTTTTTGCCGGTCAGTGTC 184999 Query 138598 TTTAC-AAAAATCTGCATG 138615 || || |||||| |||||| Sbjct 185000 TTCACGAAAAATTTGCATG 185018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496219764856560