Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1557 158 1e-33 seq2872 154 1e-32 seq93 145 7e-30 seq1709 89.7 5e-13 seq1893 86.0 6e-12 seq210 84.2 2e-11 >seq1557 Length=337913 Score = 158 bits (174), Expect = 1e-33 Identities = 163/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| || ||||| ||||| ||| |||||||||| ||| || Sbjct 14375 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCG 14316 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||| || || |||||| || |||||||| || || ||||||||||||||| | Sbjct 14315 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 14256 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || ||| ||| | ||||| | || ||||||| |||||| || || | || | |||||| Sbjct 14255 ATCTTCGTCTTCACGTTGT-CAACTGTGTCCGAACTCTCCACATCCAAAGTGATCGTTTT 14197 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||||||| || || || ||||| |||||| Sbjct 14196 GCCGGTCAGTGTCTTCACGAAAATTTGCATG 14166 >seq2872 Length=49360 Score = 154 bits (170), Expect = 1e-32 Identities = 155/199 (78%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| ||| |||||||||| ||| || |||||||| || Sbjct 1917 GTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCG 1858 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| || |||||||| || || ||||||||||||||| ||| ||| ||| Sbjct 1857 GCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTC 1798 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| | || ||||||| |||||| || || | || | ||||||||||||||| || Sbjct 1797 ACGTTGT-CAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGTCAGTGT 1739 Query 127096 TTTTACAAAAATCTGCATG 127114 || || ||||| |||||| Sbjct 1738 CTTCACGAAAATTTGCATG 1720 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| || ||||| ||||| ||| |||||||||| ||| || Sbjct 2894 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCG 2835 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||| || || |||||| || |||||||| || || ||||||||||||||| | Sbjct 2834 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 2775 Query 127025 ATTTTC 127030 || ||| Sbjct 2774 ATCTTC 2769 >seq93 Length=214751 Score = 145 bits (160), Expect = 7e-30 Identities = 163/213 (77%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| || ||||| ||||| ||| |||||||||| ||| || Sbjct 184807 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCG 184866 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||| || || |||||| || |||||||| || || ||||||||||||||| | Sbjct 184867 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 184926 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCG-TTT 127082 || ||| ||| | |||| || || ||||||| ||| || || || | || | || ||| Sbjct 184927 ATCTTCGTCTTCACGTTG-TCAACTGTGTCCGAACTTTCCACCTCCAAAGTGATCGTTTT 184985 Query 127083 TGCCGGTCAGAGTTTTTAC-AAAAATCTGCATG 127114 |||||||||| || || || |||||| |||||| Sbjct 184986 TGCCGGTCAGTGTCTTCACGAAAAATTTGCATG 185018 >seq1709 Length=109515 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 ||||||| ||||||||||| || || ||||||||||||||| ||| || ||| | | Sbjct 18224 AGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGT 18165 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 ||||| |||||| | ||| || || | || | ||||||||||| || || || | Sbjct 18164 TTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAGCGTCTTCA 18105 Query 127101 CAAAAATCTGCATG 127114 | ||||| |||||| Sbjct 18104 CGAAAATTTGCATG 18091 >seq1893 Length=1815 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/142 (74%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGA-TCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG 127032 ||||| ||||||| ||||||||| || || || ||||||||||||||| ||| || Sbjct 530 CCAGCAAAGATCAAACGCTGCTGACTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGC 589 Query 127033 CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 ||| | | ||||| |||||| | ||| || || | || | ||||||||||| || Sbjct 590 CTTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAG 649 Query 127093 AGTTTTTACAAAAATCTGCATG 127114 || || || ||||| |||||| Sbjct 650 CGTCTTCACGAAAATTTGCATG 671 >seq210 Length=19051 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 ||||| ||||||| ||||||||||| || || |||||||| |||||| ||| || | Sbjct 9035 CCAGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATCTTTGCC 8976 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | ||||| |||||| | ||| || || | || | || |||||||| || Sbjct 8975 TTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAAAGTGATGGTCTTGCCGGTAAGC 8916 Query 127094 GTTTTTACAAAAATCTGCATG 127114 || || || ||||| |||||| Sbjct 8915 GTCTTCACGAAAATTTGCATG 8895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475459948537520