Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1557 158 1e-33
seq2872 154 1e-32
seq93 145 7e-30
seq1709 89.7 5e-13
seq1893 86.0 6e-12
seq210 84.2 2e-11
>seq1557
Length=337913
Score = 158 bits (174), Expect = 1e-33
Identities = 163/211 (77%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
||||| || | || ||||| || ||||| ||||| ||| |||||||||| ||| ||
Sbjct 14375 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCG 14316
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
|||||||| || || |||||| || |||||||| || || ||||||||||||||| |
Sbjct 14315 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 14256
Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083
|| ||| ||| | ||||| | || ||||||| |||||| || || | || | ||||||
Sbjct 14255 ATCTTCGTCTTCACGTTGT-CAACTGTGTCCGAACTCTCCACATCCAAAGTGATCGTTTT 14197
Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
||||||||| || || || ||||| ||||||
Sbjct 14196 GCCGGTCAGTGTCTTCACGAAAATTTGCATG 14166
>seq2872
Length=49360
Score = 154 bits (170), Expect = 1e-32
Identities = 155/199 (78%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| ||||| ||| |||||||||| ||| || |||||||| ||
Sbjct 1917 GTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCG 1858
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||||| || |||||||| || || ||||||||||||||| ||| ||| |||
Sbjct 1857 GCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTC 1798
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| ||||| | || ||||||| |||||| || || | || | ||||||||||||||| ||
Sbjct 1797 ACGTTGT-CAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGTCAGTGT 1739
Query 127096 TTTTACAAAAATCTGCATG 127114
|| || ||||| ||||||
Sbjct 1738 CTTCACGAAAATTTGCATG 1720
Score = 102 bits (112), Expect = 8e-17
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
||||| || | || ||||| || ||||| ||||| ||| |||||||||| ||| ||
Sbjct 2894 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCG 2835
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
|||||||| || || |||||| || |||||||| || || ||||||||||||||| |
Sbjct 2834 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 2775
Query 127025 ATTTTC 127030
|| |||
Sbjct 2774 ATCTTC 2769
>seq93
Length=214751
Score = 145 bits (160), Expect = 7e-30
Identities = 163/213 (77%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
||||| || | || ||||| || ||||| ||||| ||| |||||||||| ||| ||
Sbjct 184807 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCG 184866
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
|||||||| || || |||||| || |||||||| || || ||||||||||||||| |
Sbjct 184867 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 184926
Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCG-TTT 127082
|| ||| ||| | |||| || || ||||||| ||| || || || | || | || |||
Sbjct 184927 ATCTTCGTCTTCACGTTG-TCAACTGTGTCCGAACTTTCCACCTCCAAAGTGATCGTTTT 184985
Query 127083 TGCCGGTCAGAGTTTTTAC-AAAAATCTGCATG 127114
|||||||||| || || || |||||| ||||||
Sbjct 184986 TGCCGGTCAGTGTCTTCACGAAAAATTTGCATG 185018
>seq1709
Length=109515
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040
||||||| ||||||||||| || || ||||||||||||||| ||| || ||| | |
Sbjct 18224 AGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGT 18165
Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100
||||| |||||| | ||| || || | || | ||||||||||| || || || |
Sbjct 18164 TTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAGCGTCTTCA 18105
Query 127101 CAAAAATCTGCATG 127114
| ||||| ||||||
Sbjct 18104 CGAAAATTTGCATG 18091
>seq1893
Length=1815
Score = 86.0 bits (94), Expect = 6e-12
Identities = 105/142 (74%), Gaps = 1/142 (1%)
Strand=Plus/Plus
Query 126974 CCAGCGTAGATCAATCGCTGCTGA-TCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG 127032
||||| ||||||| ||||||||| || || || ||||||||||||||| ||| ||
Sbjct 530 CCAGCAAAGATCAAACGCTGCTGACTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGC 589
Query 127033 CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092
||| | | ||||| |||||| | ||| || || | || | ||||||||||| ||
Sbjct 590 CTTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAG 649
Query 127093 AGTTTTTACAAAAATCTGCATG 127114
|| || || ||||| ||||||
Sbjct 650 CGTCTTCACGAAAATTTGCATG 671
>seq210
Length=19051
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033
||||| ||||||| ||||||||||| || || |||||||| |||||| ||| || |
Sbjct 9035 CCAGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATCTTTGCC 8976
Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093
|| | | ||||| |||||| | ||| || || | || | || |||||||| ||
Sbjct 8975 TTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAAAGTGATGGTCTTGCCGGTAAGC 8916
Query 127094 GTTTTTACAAAAATCTGCATG 127114
|| || || ||||| ||||||
Sbjct 8915 GTCTTCACGAAAATTTGCATG 8895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475459948537520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |