Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_011811.1 Length=84576 Score E Sequences producing significant alignments: (Bits) Value seq1544 123 1e-23 seq962 82.4 4e-11 >seq1544 Length=2721 Score = 123 bits (136), Expect = 1e-23 Identities = 184/252 (73%), Gaps = 17/252 (7%) Strand=Plus/Minus Query 82989 TCGGCCTGATTTACGGTGACTCAATCACTCTGGAACGTGCAGGGAACATCTTGCAACGAC 83048 ||||||||||||||||||| ||||||||||||||||||| | ||| ||||||| | Sbjct 890 TCGGCCTGATTTACGGTGATAGCATCACTCTGGAACGTGCAGAACAAATCCTGCAACGTC 831 Query 83049 TGAAAGAGCGTGGATTCGCAAGCT-GTAACGTTGTGTTCGGTGTAGGTTCATTCACTTAC 83107 ||| || || ||| ||| ||||| | |||||||||||||| || | ||| ||| Sbjct 830 TGATGGATAAGGGCTTC-AGTGCTGGTAACATCGTGTTCGGTGTAGGCTCGTACACCTAC 772 Query 83108 CAGATGATTACACGTGACTCTCTCAGCTTTGCTATCAAGGCGACTGTGGCGAC-TGTGGA 83166 ||| || || |||||| | || || | ||||||||||| || |||| ||| ||| | Sbjct 771 CAGTACATCACTCGTGACACGTTCGGCATGGCTATCAAGGCTAC-GTGG-GACAGGTGAA 714 Query 83167 CGGT----ATC--AACTACCCACTGTCAAAAGACCCAATCACCGATGACGGCACTAAGAA 83220 |||| || ||| | ||| |||||||| | |||| ||||| | ||||| Sbjct 713 CGGTGAAGGTCGTAAC-ATCCA-----GAAAGACCCGAAGACCGGCGACGGTATGAAGAA 660 Query 83221 GTCTGCAACTGG 83232 |||||||||||| Sbjct 659 GTCTGCAACTGG 648 >seq962 Length=5977 Score = 82.4 bits (90), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 22491 GCGGGATGGAGCAGT--GGTAGCTTGCCAGTTTCATTATCTGGAGGTCGTAGGTTCGAAT 22548 |||||||||||||| ||||||| | ||| |||| | ||| ||||||||||||| ||| Sbjct 297 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 238 Query 22549 CCTACTCCCGCTTCCAAAT 22567 ||||||||||| |||||| Sbjct 237 CCTACTCCCGCAACCAAAT 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 270495740110761