Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= NC_011811.1
Length=84576
Score E
Sequences producing significant alignments: (Bits) Value
seq1544 123 1e-23
seq962 82.4 4e-11
>seq1544
Length=2721
Score = 123 bits (136), Expect = 1e-23
Identities = 184/252 (73%), Gaps = 17/252 (7%)
Strand=Plus/Minus
Query 82989 TCGGCCTGATTTACGGTGACTCAATCACTCTGGAACGTGCAGGGAACATCTTGCAACGAC 83048
||||||||||||||||||| ||||||||||||||||||| | ||| ||||||| |
Sbjct 890 TCGGCCTGATTTACGGTGATAGCATCACTCTGGAACGTGCAGAACAAATCCTGCAACGTC 831
Query 83049 TGAAAGAGCGTGGATTCGCAAGCT-GTAACGTTGTGTTCGGTGTAGGTTCATTCACTTAC 83107
||| || || ||| ||| ||||| | |||||||||||||| || | ||| |||
Sbjct 830 TGATGGATAAGGGCTTC-AGTGCTGGTAACATCGTGTTCGGTGTAGGCTCGTACACCTAC 772
Query 83108 CAGATGATTACACGTGACTCTCTCAGCTTTGCTATCAAGGCGACTGTGGCGAC-TGTGGA 83166
||| || || |||||| | || || | ||||||||||| || |||| ||| ||| |
Sbjct 771 CAGTACATCACTCGTGACACGTTCGGCATGGCTATCAAGGCTAC-GTGG-GACAGGTGAA 714
Query 83167 CGGT----ATC--AACTACCCACTGTCAAAAGACCCAATCACCGATGACGGCACTAAGAA 83220
|||| || ||| | ||| |||||||| | |||| ||||| | |||||
Sbjct 713 CGGTGAAGGTCGTAAC-ATCCA-----GAAAGACCCGAAGACCGGCGACGGTATGAAGAA 660
Query 83221 GTCTGCAACTGG 83232
||||||||||||
Sbjct 659 GTCTGCAACTGG 648
>seq962
Length=5977
Score = 82.4 bits (90), Expect = 4e-11
Identities = 66/79 (84%), Gaps = 2/79 (3%)
Strand=Plus/Minus
Query 22491 GCGGGATGGAGCAGT--GGTAGCTTGCCAGTTTCATTATCTGGAGGTCGTAGGTTCGAAT 22548
|||||||||||||| ||||||| | ||| |||| | ||| ||||||||||||| |||
Sbjct 297 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 238
Query 22549 CCTACTCCCGCTTCCAAAT 22567
||||||||||| ||||||
Sbjct 237 CCTACTCCCGCAACCAAAT 219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 270495740110761
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |