Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq269 107 3e-18 >seq269 Length=200655 Score = 107 bits (118), Expect = 3e-18 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 203922 CGTACATGTGCATGGAAGACAGTTT-GCTCACGTTGGGGTCGGCCATGTGAATGTTCAGA 203980 |||| | ||||||||| |||||| || | || || | || |||||||||||||| Sbjct 148582 CGTAGAAGTGCATGGAGCTCAGTTTTGCATAA-TTCGGCTGCGCAATGTGAATGTTCAGC 148640 Query 203981 GACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGC 204040 || ||||||||||| ||||| | || || || || ||||| | | ||| ||| ||| Sbjct 148641 GATTGGCTTTGGTCAATGAACGCGGCACGGTCGGCAGCCATTTCCAGAATATCCTTTTGC 148700 Query 204041 GAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTGAGGC-ACATCTTCCCACGT 204099 | ||| |||||||||||| || ||| ||| || |||| || ||| || ||| | || Sbjct 148701 GGAATTTCCCACACCGTCCTGTACAGGTCCTTGATGTGCTGCGGCAACTGCTT--GATGT 148758 Query 204100 CCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACA 204152 ||| | |||||| || || || ||||||| || || ||| || |||||| Sbjct 148759 TCTGCACCGAGCCATTCTCCGCAATCAGTCGATTCTTCATCTGATCATCCCACA 148812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795086886228880