Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_013693.1 Length=158006 Score E Sequences producing significant alignments: (Bits) Value seq1544 89.7 5e-13 >seq1544 Length=2721 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/224 (70%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 83585 CGGTCTTCGGCTCTTTGAAGATCTCACGGAATTCACCGTTCACCT-TACCAGCCGTTGCT 83643 |||||||||| ||||| ||| | ||| |||||||||||||| | ||| ||| || Sbjct 676 CGGTCTTCGGGTCTTTCTGGATGTTACGACCTTCACCGTTCACCTGTCCCA--CGTAGCC 733 Query 83644 TTCACCGCCGTGCCAGTAC-TGTCACGGGTGTTCATCTGGTAGGTGTAGGAACCGATACC 83702 || | ||| |||| | || ||||||| ||| | |||||||||||| || || | ||| Sbjct 734 TTGATAGCCATGCC-GAACGTGTCACGAGTGATGTACTGGTAGGTGTACGAGCCTACACC 792 Query 83703 GAACACCACGTTGATGGAAGCGAAGTTCCGGCCAGCCAGACGGCTAAAGATCTGGTCTTC 83762 |||||| | ||| | | |||| | | |||||| | ||| || ||| | Sbjct 793 GAACACGATGTTACCAGCACTGAAGCCCTTATCCATCAGACGTTGCAGGATTTGTTCTGC 852 Query 83763 ACGCGCCAGGGTGATGGAGTCGCCGTAAATCAGACCGATGTGTT 83806 ||| |||| |||||| || ||||||||||| |||| | ||| Sbjct 853 ACGTTCCAGAGTGATGCTATCACCGTAAATCAGGCCGACGCGTT 896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505447771987280