Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1012 96.9 8e-15 seq1561 93.3 1e-13 seq1145 86.0 1e-11 >seq1012 Length=142389 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 199436 GACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCG 199495 ||||| ||| ||| ||||||||| | ||| || | || || || || |||||| || Sbjct 141420 GACTCTTTTCGGATGTTGTAGTCGGTCAATGTTCGACCGTCGCATAGTTGTTTTCCGTCG 141479 Query 199496 AAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACG 199555 ||||| ||||| || || ||| | ||| |||||| || ||| ||||| ||||||| Sbjct 141480 AAGATCAGACGTTGTTGATCCAGGGGAATGCCTTCTTTCTTCTGGATCTTCGCCTTCACG 141539 Query 199556 GATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTC 199615 |||| |||||| | | || || ||||| ||||| || ||| | | || ||| Sbjct 141540 TTCTCGATGGTGTCGTTGGCCTCAACCTCCAAAGTGATGGTAATACTTGCCACTGTCTTC 141599 Query 199616 ACAAAAATTTG 199626 ||||||||||| Sbjct 141600 ACAAAAATTTG 141610 >seq1561 Length=118522 Score = 93.3 bits (102), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 |||||| |||||||| || ||||| |||||||||||||| | ||||| || ||||| Sbjct 86475 GACAAGATGGAGAGTGGATTCCTTCTGGACGTTGTAGTCGGTCAAAGCGTGGCCGTCTTC 86534 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTC 199515 ||||| |||||| ||||||| ||||| ||||| || Sbjct 86535 GAGCTGTTTTCCGACGAAGATCAGACGTTGCTGATC 86570 >seq1145 Length=137139 Score = 86.0 bits (94), Expect = 1e-11 Identities = 78/96 (81%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 |||||| | |||||| || ||||| |||||||||||||| | |||||| || ||||| Sbjct 100695 GACAAGATTGAGAGT-GA-TCCTTCTGGACGTTGTAGTCGGTCAAAGTGTGACCGTCTTC 100752 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTC 199515 ||||| |||||||| ||||| ||||| ||||| || Sbjct 100753 GAGCTGTTTTCCGGCAAAGATCAGACGTTGCTGATC 100788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178817783795491