Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1709 91.5 2e-13 >seq1709 Length=109515 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 ||||| || ||||| |||||||| || | ||| | || |||||||||| |||||| | Sbjct 18231 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCC 18172 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGC 46573 || | | | | |||||||| | || || |||| |||||||||||||| || ||| Sbjct 18171 TTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAGC 18112 Query 46574 GTTTTAACAAAGATTTGCAT 46593 || || || || |||||||| Sbjct 18111 GTCTTCACGAAAATTTGCAT 18092 Score = 86.0 bits (94), Expect = 7e-12 Identities = 105/142 (74%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 46454 CCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTC 46513 ||||| || ||||| |||||||| || | ||| | || |||||||||| |||||| | Sbjct 13721 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCC 13780 Query 46514 TTGAGCGTCGCCACCGTGTCGCTCGA-TTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 || | | | | |||||||| | ||| || |||| ||||||||||| || || || Sbjct 13781 TTCACGTTTTCGATGGTGTCGCTAGGCTTCAACCTCCAGAGTGATGGTTTTTCCGGTGAG 13840 Query 46573 CGTTTTAACAAAGATTTGCATT 46594 ||| || || || ||||||||| Sbjct 13841 CGTCTTGACGAAAATTTGCATT 13862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565189838955960