Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1557 98.7 1e-15 seq820 96.9 3e-15 seq2872 89.7 5e-13 seq1709 89.7 5e-13 seq210 89.7 5e-13 seq1893 86.0 6e-12 seq2265 84.2 2e-11 >seq1557 Length=337913 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || |||||||| ||||| | || || ||| | Sbjct 14167 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGATGTGGAGAGTTCG 14226 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GAC 38360 |||| || | |||| | |||| || |||| ||||| ||||| || |||||| || Sbjct 14227 GACACAGTTGACAACG--TGAAGACGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGAT 14283 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || ||||| || | || ||||||||||| || || | ||||| | ||||||| Sbjct 14284 CAGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTAC 14343 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||||| | || || || ||||| || || | | |||||| Sbjct 14344 AACATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTCCGGGGCGGC 14394 >seq820 Length=160256 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||| | ||||| ||||| | ||||| ||| |||| | | || || || | | Sbjct 12968 AATGCAAGTTTTCGTGAAAACTTTGACGGGAAAAGCCATGGCATTGGAGGTGGACAGCTC 13027 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | || ||| | || ||| |||| || || || || | | ||| Sbjct 13028 GGACACCATCAACAACCTGAAACAGAAGGTCCAGGACACGGAAGGCATCCCAACTGGCCA 13087 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||| || | |||||||||||||| || | || ||||| | |||||||| Sbjct 13088 ACAACGGCTGATCTTTGCGGGCAAACAGCTCGATAATGACCGCACTTTGGCTGACTACAA 13147 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| |||||||| || ||||| ||| || ||||||| Sbjct 13148 CATTCAAAAGGACGCAACGCTTCATCTGCTGCTGCG 13183 >seq2872 Length=49360 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || |||||||| ||||| | || || ||| | Sbjct 1721 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGAGGTGGAGAGTTCG 1780 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GAC 38360 |||| || | |||| | |||| || |||| ||||| ||||| || |||||| || Sbjct 1781 GACACAGTTGACAACG--TGAAGACGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGAT 1837 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || ||||| || | || ||||||||||| || || | ||||| | ||||||| Sbjct 1838 CAGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTAC 1897 Query 38421 AACATCCAAAAGGA 38434 ||||| || ||||| Sbjct 1898 AACATTCAGAAGGA 1911 >seq1709 Length=109515 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/127 (78%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||||| || |||||||||||||| | || || ||||||| | Sbjct 18092 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACCATCACTCTGGAGGTTGAGGCCAGC 18151 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | ||||| | || | ||| |||| ||||| ||||| | ||||||| || | Sbjct 18152 GACACCATCGAAAACG-TGAAGGCAAAGATCCAGGACAAGGAGGGCA-TCCCGCCGGATC 18209 Query 38362 AACAGCG 38368 | ||||| Sbjct 18210 AGCAGCG 18216 >seq210 Length=19051 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/127 (78%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||||| || ||||| |||||||| | || || ||||||| | Sbjct 8896 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAGACCATCACTTTGGAGGTTGAGGCCAGC 8955 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | ||||| | || | ||| |||| ||||||||||| | ||||||| || | Sbjct 8956 GACACCATCGAAAACG-TGAAGGCAAAGATCCAGGACAAAGAGGGCA-TCCCGCCGGATC 9013 Query 38362 AACAGCG 38368 | ||||| Sbjct 9014 AGCAGCG 9020 >seq1893 Length=1815 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/116 (78%), Gaps = 3/116 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||||| || |||||||||||||| | || || ||||||| | Sbjct 670 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACCATCACTCTGGAGGTTGAGGCCAGC 611 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 |||| | | | ||||| | || | ||| |||| ||||| ||||| | |||||||| Sbjct 610 GACACCATCGAAAACG-TGAAGGCAAAGATCCAGGACAAGGAGGGCA-TCCCGCCG 557 >seq2265 Length=474335 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/188 (70%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 || || || || || ||||| | |||| |||||||| | || || ||||||| ||| Sbjct 171543 CACATTTTTGTGAAGACGCTTAATTGCAAGACCATCACTCTGGAGGTTGAGGCCATCGAT 171484 Query 38307 AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAG 38366 | | ||| | | || | |||||| || ||||| ||| ||||| |||| ||||| Sbjct 171483 ACTATCAAAAAGGTGAAGGCCAAAATCA-CGGCAAAGTGGGGATTCCGCCCGAGCAACAA 171425 Query 38367 CGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATC 38426 || | || | ||||| |||||||| || ||| ||| | | | ||||||||||| Sbjct 171424 CGATTGATCTTTGCGGGGAAACAGCTTGAGGACATGCGAAGCATGGTGGACTACAACATT 171365 Query 38427 CAAAAGGA 38434 |||||||| Sbjct 171364 CAAAAGGA 171357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500129828904320