Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1557 98.7 1e-15
seq820 96.9 3e-15
seq2872 89.7 5e-13
seq1709 89.7 5e-13
seq210 89.7 5e-13
seq1893 86.0 6e-12
seq2265 84.2 2e-11
>seq1557
Length=337913
Score = 98.7 bits (108), Expect = 1e-15
Identities = 164/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || |||||||| ||||| | || || ||| |
Sbjct 14167 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGATGTGGAGAGTTCG 14226
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GAC 38360
|||| || | |||| | |||| || |||| ||||| ||||| || |||||| ||
Sbjct 14227 GACACAGTTGACAACG--TGAAGACGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGAT 14283
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| || ||||| || | || ||||||||||| || || | ||||| | |||||||
Sbjct 14284 CAGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTAC 14343
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| || ||||| | || || || ||||| || || | | ||||||
Sbjct 14344 AACATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTCCGGGGCGGC 14394
>seq820
Length=160256
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
||||||| | ||||| ||||| | ||||| ||| |||| | | || || || | |
Sbjct 12968 AATGCAAGTTTTCGTGAAAACTTTGACGGGAAAAGCCATGGCATTGGAGGTGGACAGCTC 13027
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | | || ||| | || ||| |||| || || || || | | |||
Sbjct 13028 GGACACCATCAACAACCTGAAACAGAAGGTCCAGGACACGGAAGGCATCCCAACTGGCCA 13087
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| ||||| || | |||||||||||||| || | || ||||| | ||||||||
Sbjct 13088 ACAACGGCTGATCTTTGCGGGCAAACAGCTCGATAATGACCGCACTTTGGCTGACTACAA 13147
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||| |||||||| || ||||| ||| || |||||||
Sbjct 13148 CATTCAAAAGGACGCAACGCTTCATCTGCTGCTGCG 13183
>seq2872
Length=49360
Score = 89.7 bits (98), Expect = 5e-13
Identities = 140/194 (72%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || |||||||| ||||| | || || ||| |
Sbjct 1721 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGAGGTGGAGAGTTCG 1780
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GAC 38360
|||| || | |||| | |||| || |||| ||||| ||||| || |||||| ||
Sbjct 1781 GACACAGTTGACAACG--TGAAGACGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGAT 1837
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| || ||||| || | || ||||||||||| || || | ||||| | |||||||
Sbjct 1838 CAGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTAC 1897
Query 38421 AACATCCAAAAGGA 38434
||||| || |||||
Sbjct 1898 AACATTCAGAAGGA 1911
>seq1709
Length=109515
Score = 89.7 bits (98), Expect = 5e-13
Identities = 99/127 (78%), Gaps = 4/127 (3%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || ||||| || |||||||||||||| | || || ||||||| |
Sbjct 18092 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACCATCACTCTGGAGGTTGAGGCCAGC 18151
Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361
|||| | | | ||||| | || | ||| |||| ||||| ||||| | ||||||| || |
Sbjct 18152 GACACCATCGAAAACG-TGAAGGCAAAGATCCAGGACAAGGAGGGCA-TCCCGCCGGATC 18209
Query 38362 AACAGCG 38368
| |||||
Sbjct 18210 AGCAGCG 18216
>seq210
Length=19051
Score = 89.7 bits (98), Expect = 5e-13
Identities = 99/127 (78%), Gaps = 4/127 (3%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || ||||| || ||||| |||||||| | || || ||||||| |
Sbjct 8896 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAGACCATCACTTTGGAGGTTGAGGCCAGC 8955
Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361
|||| | | | ||||| | || | ||| |||| ||||||||||| | ||||||| || |
Sbjct 8956 GACACCATCGAAAACG-TGAAGGCAAAGATCCAGGACAAAGAGGGCA-TCCCGCCGGATC 9013
Query 38362 AACAGCG 38368
| |||||
Sbjct 9014 AGCAGCG 9020
>seq1893
Length=1815
Score = 86.0 bits (94), Expect = 6e-12
Identities = 91/116 (78%), Gaps = 3/116 (3%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || ||||| || |||||||||||||| | || || ||||||| |
Sbjct 670 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACCATCACTCTGGAGGTTGAGGCCAGC 611
Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358
|||| | | | ||||| | || | ||| |||| ||||| ||||| | ||||||||
Sbjct 610 GACACCATCGAAAACG-TGAAGGCAAAGATCCAGGACAAGGAGGGCA-TCCCGCCG 557
>seq2265
Length=474335
Score = 84.2 bits (92), Expect = 2e-11
Identities = 132/188 (70%), Gaps = 1/188 (1%)
Strand=Plus/Minus
Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306
|| || || || || ||||| | |||| |||||||| | || || ||||||| |||
Sbjct 171543 CACATTTTTGTGAAGACGCTTAATTGCAAGACCATCACTCTGGAGGTTGAGGCCATCGAT 171484
Query 38307 AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAG 38366
| | ||| | | || | |||||| || ||||| ||| ||||| |||| |||||
Sbjct 171483 ACTATCAAAAAGGTGAAGGCCAAAATCA-CGGCAAAGTGGGGATTCCGCCCGAGCAACAA 171425
Query 38367 CGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATC 38426
|| | || | ||||| |||||||| || ||| ||| | | | |||||||||||
Sbjct 171424 CGATTGATCTTTGCGGGGAAACAGCTTGAGGACATGCGAAGCATGGTGGACTACAACATT 171365
Query 38427 CAAAAGGA 38434
||||||||
Sbjct 171364 CAAAAGGA 171357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500129828904320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |