Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_014461.1 Length=73453 Score E Sequences producing significant alignments: (Bits) Value seq1544 87.8 8e-13 >seq1544 Length=2721 Score = 87.8 bits (96), Expect = 8e-13 Identities = 117/159 (74%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 49084 AACGTGGTGTTCGGTGTCGGCTCTTACACGTATCAGCACAACACGCGTGACACGTTCGGG 49143 ||| | ||||||||||| ||||| ||||| || ||| ||| ||| |||||||||||||| Sbjct 804 AACATCGTGTTCGGTGTAGGCTCGTACACCTACCAGTACATCACTCGTGACACGTTCGGC 745 Query 49144 TCCGCGATGAAGGCGACGTGGGTAAAGGTCGGC-GCGAAGGAATACAACCTCCTGAAGAA 49202 || || ||||| ||||||| | |||| | | ||||| ||| ||| ||| | Sbjct 744 ATGGCTATCAAGGCTACGTGGG-ACAGGTGAACGGTGAAGG-TCGTAACATCCAGAAAGA 687 Query 49203 CCCGGTGACGGACGACGGGACAAAGAAGTCCGCGACGGG 49241 |||| ||| | |||||| | |||||||| || || || Sbjct 686 CCCGAAGACCGGCGACGGTATGAAGAAGTCTGCAACTGG 648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 234905121597542