Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1156 95.1 2e-14 seq280 86.0 8e-12 >seq1156 Length=347766 Score = 95.1 bits (104), Expect = 2e-14 Identities = 151/214 (71%), Gaps = 7/214 (3%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| || || ||||| ||||| ||||| ||||| || || || || || || || | Sbjct 100547 TTCTTGTCAAGGCCGTAAGCGATGGCCGCGGCCGTCGGCTCGTTGATGATGCGCAGCACG 100488 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 ||||| || || || | | || || || || | ||| || || || | ||| ||||| Sbjct 100487 TTCAGACCGGCGATTGACCCAGCGTCCTTGGTGG-TTGGCGCTGAGAGTTGTTGAAGTAA 100429 Query 7715 GCCGGGACCGTTAC---GACC---GCGTCCGTGACTTTCTTACCGAGATACGATTCCGCG 7768 |||||||| || || |||| |||||| | || ||| || ||| | | || || Sbjct 100428 GCCGGGACAGTGACCGTGACCACGGCGTCCTTCACAGTCTGGCCAAGAAAGGCCTCGGCC 100369 Query 7769 ATATCTTTCATTTTGGTAAGAACCATCGATGAAA 7802 | || ||||||||||| || |||||||| |||| Sbjct 100368 GTCTCCTTCATTTTGGTCAGCACCATCGACGAAA 100335 >seq280 Length=416066 Score = 86.0 bits (94), Expect = 8e-12 Identities = 196/295 (66%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 7021 GATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATT 7080 ||| |||||||| || | || ||||| |||||||| || || || || || | || || Sbjct 250808 GATTGCGGCTTGAACAGCAGCGCCGTACGCGACCGCTTCGTCAGGATTGATGGACTTGTT 250749 Query 7081 CAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGA 7140 || || || ||| || | || || | || | ||| | ||||| ||||| || || Sbjct 250748 CAACTCCTTGCCGGAGAAGAAGTCGGACAGCAACTTTTGCACCTTCGGAATTCGAGTAGA 250689 Query 7141 TCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGT 7200 || ||||||| ||||| || | | | ||| || || ||||| | ||| || | | Sbjct 250688 CCCGCCGACCAGCACGATGTCGTGGATCTGCGACTTGTCCATCTTCGCGTCGCGCAACGC 250629 Query 7201 TTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 || || || || ||||| | |||||| | ||| || || ||||||||||| || Sbjct 250628 CTTCTCAACCGGCTCCATGGTTCCACGGAAGAGGTCAGCGCAAAGCTCCTCAAAACGAGC 250569 Query 7261 ACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315 || || | || ||| | || | ||||| | ||||| || || || ||| Sbjct 250568 GCGCGTGACATTGGTGTAGTAGTCGATTCCGTCAAACAACGAGTCGATCTCGATG 250514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635078234153320