Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq269 89.7 6e-13 seq3041 82.4 9e-11 seq487 82.4 9e-11 seq280 82.4 9e-11 >seq269 Length=200655 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 106459 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 106518 ||| || || || ||||| ||||| ||||| ||||||||| | || || | || Sbjct 149915 AAGCGCAATGGAGGCCAAGTTGCACACAGCGGTCTCATCCGGTGACGAATATTCAATGAT 149974 Query 106519 TTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT 106578 ||| || ||||| || || | || || || ||||| || | || || ||| || Sbjct 149975 TTCGGTGCACAAATTTGAGCATTTTATGGTGCCCAAGTTTTGCTGATTTGACTTCCGATT 150034 Query 106579 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGC 106638 |||||| |||||| | | |||||| ||||| || ||||||||||| || ||| || Sbjct 150035 GCACGCGTCCTTGAACAACATGTACGGCGTGCCGGTCTCCGTCTGCGAACTGATGATGCT 150094 Query 106639 CTTCCACACATC 106650 ||||||||| || Sbjct 150095 CTTCCACACTTC 150106 >seq3041 Length=1087 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 || ||| ||||||||| |||||| ||||||||||||||| |||||| ||||| ||||| Sbjct 154 TCCTATGGTGTAGTGGCTATCACTCTGGACTTTGAATCCAGCAACCCCGGTTCGAATCCG 95 Query 136226 GGTAGGAGCT 136235 ||||||| || Sbjct 94 GGTAGGACCT 85 >seq487 Length=181883 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 136171 TAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGTAG 136230 |||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||| || || Sbjct 20817 TAGTGTAGTGGTGATCACATTGGACTTTGAATCCAATAACCCCGGTTCGAATCCGGGCAG 20876 Query 136231 GAGCT 136235 || || Sbjct 20877 GACCT 20881 >seq280 Length=416066 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 || ||| ||||||||| |||||| ||||||||||||||| |||||| ||||| ||||| Sbjct 202999 TCCTATGGTGTAGTGGCTATCACTCTGGACTTTGAATCCAGCAACCCCGGTTCGAATCCG 202940 Query 136226 GGTAGGAGCT 136235 ||||||| || Sbjct 202939 GGTAGGACCT 202930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589930113274520