Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_015292.1 Length=84565 Score E Sequences producing significant alignments: (Bits) Value seq1544 122 5e-23 seq962 82.4 4e-11 >seq1544 Length=2721 Score = 122 bits (134), Expect = 5e-23 Identities = 185/254 (73%), Gaps = 17/254 (7%) Strand=Plus/Minus Query 82977 TCGGCCTGATTTACGGTGACTCAATCACTCTGGAACGTGCAGGGAACATCTTGCAACGAC 83036 ||||||||||||||||||| ||||||||||||||||||| | ||| ||||||| | Sbjct 890 TCGGCCTGATTTACGGTGATAGCATCACTCTGGAACGTGCAGAACAAATCCTGCAACGTC 831 Query 83037 TGAAAGAGCGTGGATTCGCAAGCT-GTAACGTTGTGTTCGGTGTGGGTTCATTCACTTAC 83095 ||| || || ||| ||| ||||| | ||||||||||| || || | ||| ||| Sbjct 830 TGATGGATAAGGGCTTC-AGTGCTGGTAACATCGTGTTCGGTGTAGGCTCGTACACCTAC 772 Query 83096 CAGATGATTACACGTGACTCTCTCAGCTTTGCTATCAAGGCGACTGTGGCGAC-TGTGGA 83154 ||| || || |||||| | || || | ||||||||||| || |||| ||| ||| | Sbjct 771 CAGTACATCACTCGTGACACGTTCGGCATGGCTATCAAGGCTAC-GTGG-GACAGGTGAA 714 Query 83155 CGGT----ATC--AACTACCCACTGTCAAAAGACCCAATCACCGATGACGGCACTAAGAA 83208 |||| || ||| | ||| |||||||| | |||| ||||| | ||||| Sbjct 713 CGGTGAAGGTCGTAAC-ATCCA-----GAAAGACCCGAAGACCGGCGACGGTATGAAGAA 660 Query 83209 GTCTGCAACTGGCT 83222 |||||||||||||| Sbjct 659 GTCTGCAACTGGCT 646 >seq962 Length=5977 Score = 82.4 bits (90), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 22480 GCGGGATGGAGCAGT--GGTAGCTTGCCAGTTTCATTATCTGGAGGTCGTAGGTTCGAAT 22537 |||||||||||||| ||||||| | ||| |||| | ||| ||||||||||||| ||| Sbjct 297 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 238 Query 22538 CCTACTCCCGCTTCCAAAT 22556 ||||||||||| |||||| Sbjct 237 CCTACTCCCGCAACCAAAT 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 270460543059278