Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2872 147 5e-30 seq1557 147 5e-30 seq93 143 6e-29 seq820 122 2e-22 seq2298 91.5 3e-13 seq1012 84.2 5e-11 >seq2872 Length=49360 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||||||||| || ||||| ||||| ||||| | || | |||||||||||||| Sbjct 1924 GTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTG 1865 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| || ||||| || || || || ||||| || ||||| || || || Sbjct 1864 TTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTT 1805 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| |||| ||||||||||| ||||| || | || | ||| || || || Sbjct 1804 CGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGT 1745 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | |||||| Sbjct 1744 CAGTGTCTTCACGAAAATTTGCAT 1721 Score = 100 bits (110), Expect = 6e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||||||||| || ||||| ||||| ||||| | || | |||||||||||||| Sbjct 2889 GTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTG 2830 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| || ||||| || || || || ||||| || ||||| || || || Sbjct 2829 TTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTT 2770 >seq1557 Length=337913 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||||||||| || ||||| ||||| ||||| | || | |||||||||||||| Sbjct 14370 GTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTG 14311 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| || ||||| || || || || ||||| || ||||| || || || Sbjct 14310 TTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTT 14251 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| |||| ||||||||||| ||||| || | || | ||| || || || Sbjct 14250 CGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACATCCAAAGTGATCGTTTTGCCGGT 14191 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | |||||| Sbjct 14190 CAGTGTCTTCACGAAAATTTGCAT 14167 >seq93 Length=214751 Score = 143 bits (158), Expect = 6e-29 Identities = 157/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||||||||| || ||||| ||||| ||||| | || | |||||||||||||| Sbjct 184812 GTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTG 184871 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| || ||||| || || || || ||||| || ||||| || || || Sbjct 184872 TTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTT 184931 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT-CCTG 195115 ||| ||||| |||| ||||||||||||||||| || | || | ||| ||| || | Sbjct 184932 CGTCTTCACGTTGTCAACTGTGTCCGAACTTTCCACCTCCAAAGTGATCGTTTTTGCCGG 184991 Query 195116 TCAAAGTTTTTACG-AACACTTGCAT 195140 ||| || || ||| || | |||||| Sbjct 184992 TCAGTGTCTTCACGAAAAATTTGCAT 185017 >seq820 Length=160256 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 || ||||| || | || |||||||| ||||| || || | ||| | ||| |||||| Sbjct 13174 AGATGAAGCGTTGCGTCCTTTTGAATGTTGTAGTCAGCCAAAGTGCGGTCATTATCGAGC 13115 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 || || || || ||||| || ||||||||| | | || |||||||| |||| || | Sbjct 13114 TGTTTGCCCGCAAAGATCAGCCGTTGTTGGCCAGTTGGGATGCCTTCCGTGTCCTGGACC 13055 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || || || | ||| | ||||||||||| || ||||| || | | | | ||||| Sbjct 13054 TTCTGTTTCAGGTTGTTGATGGTGTCCGAGCTGTCCACCTCCAATGCCATGGCTTTTCCC 12995 Query 195115 GTCAAAGTTTTTACGAACACTTGCATT 195141 ||||||||||| ||||| ||||||||| Sbjct 12994 GTCAAAGTTTTCACGAAAACTTGCATT 12968 >seq2298 Length=272061 Score = 91.5 bits (100), Expect = 3e-13 Identities = 132/185 (71%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 194947 GACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCG 195006 ||||| |||||||| ||||| || | | ||| | ||||| ||||| || | ||| Sbjct 213131 GACTCCTTTTGAATGTTGTAGTCCACCATGCTTCGCATGTCTTCAAGCTGTTTCCTTGCA 213072 Query 195007 AAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACG 195066 ||||| || || |||| | | |||||||||||||||||||| ||||| ||| ||| Sbjct 213071 AAGATCAGCCGCAGTTGCT-TCTTGGAATGCCTTCTTTGTCTTGTATTTTGGCCTTCACG 213013 Query 195067 TTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126 ||||| || ||||| | || || || || || | |||||||| || | || || Sbjct 213012 TTCTCGATAGTGTCGCTAGCCTCAACCTCCAGAGTGATGGTCTTTCCGGTAAGCGTCTTC 212953 Query 195127 ACGAA 195131 ||||| Sbjct 212952 ACGAA 212948 >seq1012 Length=142389 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 194945 TGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTG 195004 ||||||||||| | || ||||| |||| | |||| || || || || || || Sbjct 141418 TGGACTCTTTTCGGATGTTGTAGTCGGTCAATGTTCGACCGTCGCATAGTTGTTTTCCGT 141477 Query 195005 CGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGA 195064 ||||||| || |||||||| || | |||||||||||||| | || || || ||| | Sbjct 141478 CGAAGATCAGACGTTGTTGATCCAGGGGAATGCCTTCTTTCTTCTGGATCTTCGCCTTCA 141537 Query 195065 CGTTCTCAATGGTGTC 195080 ||||||| |||||||| Sbjct 141538 CGTTCTCGATGGTGTC 141553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109383898703591