Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_015938.1 Length=89916 Score E Sequences producing significant alignments: (Bits) Value seq1544 109 3e-19 >seq1544 Length=2721 Score = 109 bits (120), Expect = 3e-19 Identities = 173/247 (70%), Gaps = 1/247 (0%) Strand=Plus/Plus Query 72833 AAGCCTTTGGCAGACTTCTTGGTTCCATCGTCAGTTGCAGGGTCTTTGAAGATTTCACGA 72892 ||||| | ||||||||||| | || ||| | || |||||||| ||| | |||| Sbjct 645 AAGCCAGTTGCAGACTTCTTCATACCGTCGCCGGTCTTCGGGTCTTTCTGGATGTTACGA 704 Query 72893 GGTTCACCATCAACGATACCCCATGTCGCCTTCATCGCCCAACCCAGAGTGTCACGAGTG 72952 |||||| | || | |||| || ||||| || ||| || | |||||||||||| Sbjct 705 CCTTCACCGTTCACC-TGTCCCACGTAGCCTTGATAGCCATGCCGAACGTGTCACGAGTG 763 Query 72953 ACATACTGATAGGTGAACGAGCCGATACCCAGCACGACGTTGCTAGAGGCAAAGCCCTTA 73012 | ||||| |||||| ||||||| | ||| | ||||| ||| | || ||||||||| Sbjct 764 ATGTACTGGTAGGTGTACGAGCCTACACCGAACACGATGTTACCAGCACTGAAGCCCTTA 823 Query 73013 GCTTTCAGACGCTGGAAGATTTCCAGTTGGCGAACCAGGGAGATTGAATCGCCGTAAATC 73072 | ||||||| || | ||||| | || |||| | ||| ||| ||||||||| Sbjct 824 TCCATCAGACGTTGCAGGATTTGTTCTGCACGTTCCAGAGTGATGCTATCACCGTAAATC 883 Query 73073 AGGCCGA 73079 ||||||| Sbjct 884 AGGCCGA 890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 287582308739781