Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq38 87.8 2e-12 >seq38 Length=214606 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 19014 TGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGA 19073 ||||| ||||||| || || | |||||||| |||||| || | ||||| ||| || Sbjct 74883 TGTTAGGCCAGGCAGAAGGCCACGTTTTTTTAGCCAGAAAATTGCGGCAAAACTTCCGGA 74942 Query 19074 AAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATT 19133 ||||| || || || ||||| ||||| ||||| |||||||| || | | || || Sbjct 74943 GAAGAAAATGCCCTCAACTGCAGCAAACGCAACGAGTCTTTCCGCAAAGGTCGCCTCCGA 75002 Query 19134 ATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACAT 19179 | | || ||| |||||||| ||||||||||| || ||| || Sbjct 75003 ACTCGCAACCCAACGAAGTGCCCAGTCAGCCTTCTTCTTGACAAAT 75048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562060507827720