Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq279 91.5 1e-12 seq643 89.7 4e-12 >seq279 Length=200696 Score = 91.5 bits (100), Expect = 1e-12 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || |||||||| |||||||| || || || ||||||||||| || || || ||||||| | Sbjct 85734 GGCATTCCTCCGGCTCCTCGCGGCGTTCCACAAATTGAAGTCACCTTTGAGATCGATGTC 85675 Query 552567 AATGGAATTTTGAATGTGACTGC 552589 |||||||||||| | |||||||| Sbjct 85674 AATGGAATTTTGCACGTGACTGC 85652 >seq643 Length=169616 Score = 89.7 bits (98), Expect = 4e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 550445 GCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCT 550504 ||||| |||||||| ||| ||||||||||| ||||| |||||| | ||||||||||| Sbjct 153123 GCTACCAAAGATGCGGGAAAAATTGCTGGACTGAATGTGCTTCGTGTGATCAATGAACCA 153182 Query 550505 ACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||| ||||| | || ||||| || ||||| Sbjct 153183 ACTGCAGCTGCCTTGGCTTATGGCCTCGATAA 153214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028932524762770