Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1557 104 2e-17 seq2872 102 6e-17 seq1709 82.4 6e-11 >seq1557 Length=337913 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || || || || || ||||| ||||| || || | | |||| || Sbjct 14375 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCG 14316 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || || ||||| |||| || || ||||| ||||| ||||| || || || || Sbjct 14315 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 14256 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || || ||||| || | ||||| || | ||||| ||||||| Sbjct 14255 ATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACATCCAAAGTGATCGTTTTG 14196 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| | || || || || || |||||| Sbjct 14195 CCGGTCAGTGTCTTCACGAAAATTTGCATG 14166 >seq2872 Length=49360 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || || || || || ||||| ||||| || || | | |||| || | || Sbjct 1923 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGT 1864 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| || || ||||| ||||| ||||| || || || || || || Sbjct 1863 TTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTC 1804 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || || ||||| || | ||||| || | ||||| |||||||||||| Sbjct 1803 GTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGTC 1744 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || || |||||| Sbjct 1743 AGTGTCTTCACGAAAATTTGCATG 1720 >seq1709 Length=109515 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||| ||||| ||||||||||| ||||| ||||| ||||| || || || || || || Sbjct 18235 CTGACCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTT 18176 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || || |||| | ||||| | || || || ||||||| ||||||||||| Sbjct 18175 TGCCTTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGT 18116 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || || || |||||| Sbjct 18115 AAGCGTCTTCACGAAAATTTGCATG 18091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396245205863661