Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq2386 96.9 5e-15 >seq2386 Length=1330 Score = 96.9 bits (106), Expect = 5e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 139976 CATCATCTCCTTGGCCTTCTCGATGAAGATACG-GCCGATGGTGTTGCCGACGCCGCGCG 140034 ||||| |||||| |||| | |||| || || | |||||| ||||||| | ||| || | Sbjct 794 CATCAGCTCCTTACCCTTGTTGATGTAG-TAGGAGCCGATCATGTTGCCAATGCCACGGG 852 Query 140035 AGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGT 140094 |||| ||||| ||||| ||||||||| | | ||||| | ||||| |||||||||| Sbjct 853 AGCCAGAGTGCAGCATAACCCAGACGTCTTCATTTTCGTCAATGCAGATTTCGATGAAGT 912 Query 140095 GGTTGCCGCCGCCCAGCGTGCC 140116 ||||||| |||||||| || Sbjct 913 GGTTGCCCGATCCCAGCGTACC 934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715714505894400