Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_019529.1 Length=111506 Score E Sequences producing significant alignments: (Bits) Value seq1860 129 4e-25 seq2035 86.0 4e-12 >seq1860 Length=1884 Score = 129 bits (142), Expect = 4e-25 Identities = 526/810 (65%), Gaps = 28/810 (3%) Strand=Plus/Plus Query 30658 TGGTGGTACAGCAGCAGGTGTTATGCCTGTAATCGAAGATTATGTACAATGT-ATG---C 30713 |||||| | ||| | ||||| ||||| || || ||||| | ||| || ||| | Sbjct 453 TGGTGGCAAAGCTTCGGGTGTGATGCCAGTGATT-AAGAT---GCACATTGAGATGTCAC 508 Query 30714 GTGATGTGGCTCAAGGTGCTACAC-GTCGTGGTGCTTGGGCAGGTTATCTTCCAATGGAT 30772 ||||||| |||||||| | | | |||||||||||||| | |||||| || Sbjct 509 GTGATGTCACTCAAGGTCAGAGTCCGCCGTGGTGCTTGGGCTGCTTATCTGAACATCATG 568 Query 30773 CACGGTGACTTCTATGAGGTTGTTACCTATCTGAAGAACTATCCAGATGACCTTAACCTA 30832 || || ||||||| || || || | |||| |||| | |||||||| | ||| | Sbjct 569 CATGGCGACTTCTGGGAAGTGATTGCGCATCTTGAGAAAGAGCCAGATGATTTCAACATG 628 Query 30833 GGTTGGAATATCTCGGATGAGTTCGTAAGAAAACTAGAAGCTGGTAATGAAGATGCAATC 30892 || |||| || || || ||||| || || | |||||||| | || || | Sbjct 629 GGCTGGATCATTGATGACGAATTCGTTGCCAAGCTTAACGCTGGTAACAAGGAAGCGCAC 688 Query 30893 GATCG--TCTAGCTAAGTCTCTGCACACTAAGCTGATTACAGGTAAAGGCTACTACTTCT 30950 | || || | | | || ||| ||| || | || ||||||||||||| ||||| Sbjct 689 AAACGGTTCAAACGAG--CTATGCGTGTGAAGATGGTAACTGGTAAAGGCTACTTCTTCT 746 Query 30951 TCCCTGATAAGGTTAATCGCCAGTCTCCACAAATGTATAAAGATCTAGGCCTAGATG-TA 31009 || || || || || || | ||| | ||||| || ||| | || || |||| | Sbjct 747 TCATCGACAAAGTGAACCGTAATCGTCCTGAGATGTACAAGGATTTGGGACT-GATGGTG 805 Query 31010 CGTGCAA-GTAACTTGTGTACTGAAATCAACCTATTCAGTGACCCAGACCA-TACA--TT 31065 ||| | | ||| || || |||||| ||| ||| || ||| | | |||| | Sbjct 806 AAGGCATCGCAGCTT-TGCACCGAAATCTTCCTGCACAGCGATGCAGCCAAATACACCTA 864 Query 31066 TACATGTGTACTAAGTTCTATGAACCTAGCACGTTATGATGAGTGGAAAGATACTGATGC 31125 ||| ||||| || || |||||| | | | |||||||||||||| |||||||| Sbjct 865 TACTTGTGTGCTTGCTTGGATGAACATGTCGAAGTGGGATGAGTGGAAAGACACTGATGC 924 Query 31126 AGTATTCGTAGCTACAGTATTCTTGGATTGTGTTGCTCAGGAATTTATTGAACAAGCACG 31185 ||| | ||| ||||| || ||| | ||||| |||| || || || ||||||||| Sbjct 925 AGTGTACGTTGCTACTGTGTTCCTTGATTGCGTTGTGTCTGAGTTCATCGAACAAGCAAA 984 Query 31186 AGGTATTCCAGGACTAGAGAAAGCTATTCGTTTCACCGAAAAATCTCGCGCATTAGGTCT 31245 ||||| || || ||||||||| | | || ||| || || | || || Sbjct 985 GCAGATTCCGGGGCTGGAGAAAGCTGTAGCTGCAACTGAAGCTGGACGTGCTATTGGACT 1044 Query 31246 AGGTGGTTTAGGTTTCCATACTTACCTACAAGATAATATGATTGCTTTCGAGACTTTCGA 31305 ||| | || | ||||| || |||||| | |||||| | | ||||| | || Sbjct 1045 AGGGGCCGGTGGATATCATACCTATCTACAATCCCACATGATTCCGTACGAGAGCATTGA 1104 Query 31306 AGCTCATATGAAGAACCTAGAGATCTTTACTCATATGTCCAATGAAGCA--CTACG--TG 31361 ||||| ||| |||| | | | || | || ||| || | |||| ||| | || Sbjct 1105 TGCTCAAATGTGGAACATCAAAGTGTTCAAGCAGATG---AAAG-AGCAGTCTATGGATG 1160 Query 31362 CATCTAAGTGGATGGCTGAAGTTATGGGAGAACCAGAATGGTGTAAGGGCTATGGTGTTC 31421 | || | |||| ||||| ||| ||||||| || || ||||| || || |||||||| | Sbjct 1161 CGTCGAGGTGGCTGGCTAAAGAACTGGGAGAGCCTGAGTGGTGCAAAGGTTATGGTGTAC 1220 Query 31422 GTAATACCCATAGATTAGCAGTTGCTCCAA 31451 | || || | || || |||||||||| Sbjct 1221 GCTTCACTCACAATTTGGCTGTTGCTCCAA 1250 >seq2035 Length=87203 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 45236 GCGCCCTTAGCTCAGCTGGATAGAGCACGTCCCTTCTAAGGATGTGGTCGTAGGTTCGAA 45295 |||||| |||||||| |||||||||||||| ||||||||| ||||||| |||||||| Sbjct 83834 GCGCCCGTAGCTCAGTTGGATAGAGCACGTGCCTTCTAAGCTCGTGGTCGCTGGTTCGAA 83775 Query 45296 TCCTACAGGGCGTGCCA 45312 ||| | ||||| |||| Sbjct 83774 TCCAGCCGGGCGCGCCA 83758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356664521605051