Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_019910.1 Length=159624 Score E Sequences producing significant alignments: (Bits) Value seq1544 98.7 1e-15 >seq1544 Length=2721 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/224 (71%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 44986 AACACATCGGTCTGATCTACGGTGACTCCATCACCCTGGCACGTGAAGACCAGATCTTTA 45045 ||| | |||| ||||| |||||||| |||||| |||| ||||| ||| || ||| | Sbjct 896 AACGCGTCGGCCTGATTTACGGTGATAGCATCACTCTGGAACGTGCAGAACAAATCCTGC 837 Query 45046 GCCGTCTGGCTGACCGGAACTTCGCTTCCATCAACGTGGTGTTCGGTATCGGTTCCTACA 45105 |||||| || | |||| | | ||| | ||||||||| | || || |||| Sbjct 836 AACGTCTGATGGATAAGGGCTTCAGTGCTGGTAACATCGTGTTCGGTGTAGGCTCGTACA 777 Query 45106 CCTACCAGATGAACACCCGTGACA-GTACTGGCACGGCGGTGAAAGCAACGGCTGGTA-A 45163 |||||||| | ||| ||||||| || | |||| ||| | || || ||| ||| | | Sbjct 776 CCTACCAGTACATCACTCGTGACACGTTC-GGCATGGCTATCAAGGCTACG--TGGGACA 720 Query 45164 GGTGAACGGTGAATTCCGTGAGATCTTCAAAGAGCCGAAGACCG 45207 ||||||||||||| ||| | ||| ||||| |||||||||| Sbjct 719 GGTGAACGGTGAAGGTCGTAACATCCAGAAAGACCCGAAGACCG 676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510624927166720