Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_020201.1 Length=142349 Score E Sequences producing significant alignments: (Bits) Value seq1544 87.8 2e-12 >seq1544 Length=2721 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 103384 TCGGCCTGATTTACGGTGACTCCATCACCGTGGCTCGTGCCAAAGAGATCTTCGAGCGCT 103443 ||||||||||||||||||| |||||| ||| ||||| || | ||| | | || Sbjct 890 TCGGCCTGATTTACGGTGATAGCATCACTCTGGAACGTGCAGAACAAATCCTGCAACGTC 831 Query 103444 TGGAGGCAAAGGGCTTTGCCTCAAGCAACATTGTGTTTGGTGTTGGTTCATACACCACGC 103503 || || |||||||| | | ||||| ||||| ||||| || || |||||| | Sbjct 830 TGATGGATAAGGGCTTCAGTGCTGGTAACATCGTGTTCGGTGTAGGCTCGTACACCTACC 771 Query 103504 AGTACAACACTCGTGACTCTCTTGGTATGGCTGTTAAGGCAAC 103546 |||||| |||||||||| | | || |||||| | ||||| || Sbjct 770 AGTACATCACTCGTGACACGTTCGGCATGGCTATCAAGGCTAC 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455349676409720