Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2236 174 2e-38 seq1432 174 2e-38 seq2872 152 7e-32 seq1557 152 7e-32 seq93 149 8e-31 seq2298 127 3e-24 seq279 120 4e-22 seq280 118 1e-21 seq839 105 9e-18 seq2265 96.9 5e-15 seq1156 93.3 6e-14 seq1926 91.5 2e-13 >seq2236 Length=286432 Score = 174 bits (192), Expect = 2e-38 Identities = 251/352 (71%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 195638 GAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAA 195697 ||| ||||| | |||||| ||||||||||||||||||| || || | || | || | Sbjct 25329 GAAGTTTCGGCGATGGTGCTGATTAAGATGAAGGAGACGGCCGAGGCCTTTCTTGGCCAG 25270 Query 195698 ACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCG 195757 |||||||| || || || |||||||| || |||||||||| || || || || || || Sbjct 25269 ACTGTGAAGGACGCCGTGGTGACTGTCCCGGCTTACTTCAACGACTCTCAGCGCCAAGCC 25210 Query 195758 ACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACA 195817 || |||||||||| | | ||||| ||||| ||| || | || ||||| ||||| || Sbjct 25209 ACCAAGGACGCTGGTTCAATTGCCGGTCTGAACGTGCTGCGCATCATCAACGAACCGACG 25150 Query 195818 GCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGAC--GAAGATAAAAATGTATTGA 195875 || || || || || || || || ||||||| | |||| | || | || | | Sbjct 25149 GCCGCGGCCATCGCCTACGGCCTTGACAAGA--AGGGACAGGGCGAGCGTCACGTGCTCA 25092 Query 195876 TCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATAT 195935 |||| || | || || || || || ||||| || |||| | |||| | || | | Sbjct 25091 TCTTCCATTTGGGCGGCGGCACCTTCGATGTGTCGATTCTGACTATTAATAAAGGCAACT 25032 Query 195936 TCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 ||||||| ||| | || |||||||| |||||||| || || || || ||||| Sbjct 25031 TCGAAGTGAAGTCGACCGCTGGTGACACTCATCTTGGGGGAGAGGACTTCGA 24980 >seq1432 Length=3178 Score = 174 bits (192), Expect = 2e-38 Identities = 248/349 (71%), Gaps = 0/349 (0%) Strand=Plus/Plus Query 195639 AAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAA 195698 |||||||||| |||||| ||| ||||||||||||||| || || | || | || | | Sbjct 590 AAATTTCGTCGATGGTGCTGACTAAGATGAAGGAGACGGCCGAGGCCTTTCTTGGCCAGA 649 Query 195699 CTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGA 195758 | ||||| || || || || ||||| || |||||||||| | | || || || || | Sbjct 650 CCGTGAAGGACGCCGTGGTCACTGTTCCGGCTTACTTCAACTACTTTCAGCGCCAAGCCA 709 Query 195759 CAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAG 195818 | | |||||||| || || ||| | ||| || | || ||||| || || | | Sbjct 710 CCAGGGACGCTGGGTTAATCGCCGGTTTGAACGTGCTGCGCATCATCAAGGAGCCGTCGG 769 Query 195819 CGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCT 195878 | || || || ||||| ||||| |||||||| | | | || | || | |||| Sbjct 770 CCGCGGCCATCGCTTACGGTCTTGACAAGAAGGGGCAGGGCGAGCGTCAGGTGCTCATCT 829 Query 195879 TTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCG 195938 ||||||| || || ||||| || ||||| || |||| | |||||| || || || |||| Sbjct 830 TTGATCTGGGCGGCGGTACCTTCGATGTGTCGATTCTGACTATTGAGGGCGGCATCTTCG 889 Query 195939 AAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 |||| ||| | || |||||||| |||||||| || || || || ||||| Sbjct 890 AAGTGAAGTCGACCGCTGGTGACACTCATCTTGGGGGAGAGGACTTCGA 938 >seq2872 Length=49360 Score = 152 bits (168), Expect = 7e-32 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || ||||| || || || || ||||| ||||| | ||||| ||| || Sbjct 1721 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGAGGTGGAGAGTTCG 1780 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||| | || ||| | || | ||||| || || ||||| ||||| || || |||||| Sbjct 1781 GACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 1840 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 ||||| || || ||||| || |||||||| |||||||| || || | || || |||||| Sbjct 1841 CAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAAC 1900 Query 172042 GTTCAAAAGGAGTCTACTCTACAC 172065 |||| |||||||| ||||| ||| Sbjct 1901 ATTCAGAAGGAGTCCACTCTTCAC 1924 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| || || ||||| ||||| || || ||||||||||| || || ||||| || ||| Sbjct 2770 AAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAGCAACGGCTGATCTTTGCCGGCAAA 2829 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 ||||| |||||||| || || | || || |||||| |||| |||||||| ||||| ||| Sbjct 2830 CAGCTCGAAGATGGCCGCACGATGGCCGACTACAACATTCAGAAGGAGTCCACTCTTCAC 2889 Query 172066 CTTGTTCTAAGGCTTCGGGGTGG 172088 | || || | || ||||| || Sbjct 2890 TTGGTCCTTCGCCTCCGGGGCGG 2912 >seq1557 Length=337913 Score = 152 bits (168), Expect = 7e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || ||||| || || || || ||||| ||||| | || || ||| || Sbjct 14167 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGATGTGGAGAGTTCG 14226 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||| | || ||| | || | ||||| || || ||||| ||||| || || |||||| Sbjct 14227 GACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 14286 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 ||||| || || ||||| || |||||||| |||||||| || || | || || |||||| Sbjct 14287 CAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAAC 14346 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 |||| |||||||| ||||| ||| | || || | || ||||| || Sbjct 14347 ATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTCCGGGGCGG 14393 >seq93 Length=214751 Score = 149 bits (164), Expect = 8e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 171862 ATGCAAATCTTT-GTGAAAACCCTTACTGG-AAAAACTATCACCCTCGAGGTTGAGTCGT 171919 |||||||| ||| ||||| || || || || |||||| ||||| | ||||| || | Sbjct 185017 ATGCAAATTTTTCGTGAAGACACTGACCGGCAAAAACGATCACTTTGGAGGTGGAAAGTT 184958 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | |||||| | || ||| | || | ||||| || || ||||| ||||| || || |||| Sbjct 184957 CGGACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATC 184898 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 ||||||| || || ||||| || |||||||| |||||||| || || | || || |||| Sbjct 184897 AGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACA 184838 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 || |||| |||||||| ||||| ||| | || || | || ||||| || Sbjct 184837 ACATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTCCGGGGCGG 184789 >seq2298 Length=272061 Score = 127 bits (140), Expect = 3e-24 Identities = 150/202 (74%), Gaps = 7/202 (3%) Strand=Plus/Plus Query 171866 AAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACA 171925 |||| || ||||| || ||||| ||||| || ||||| || ||||||||| | |||| Sbjct 212943 AAATTTTCGTGAAGACGCTTACCGGAAAGACCATCACTCTGGAGGTTGAGGCTAGCGACA 213002 Query 171926 CAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAA- 171984 | ||||| ||| | || ||||| || ||||| || |||||||||||| | ||||| Sbjct 213003 CTATCGAGAACGTGAAGGCCAAAATACAAGACAAAGAAGGCATTCCA----AGAAGCAAC 213058 Query 171985 --CGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACG 172042 || || || ||||| | |||||||||||||| || | | | | || |||||| Sbjct 213059 TGCGGCTGATCTTTGCAAGGAAACAGCTTGAAGACATGCGAAGCATGGTGGACTACAACA 213118 Query 172043 TTCAAAAGGAGTCTACTCTACA 172064 ||||||||||||||| ||||| Sbjct 213119 TTCAAAAGGAGTCTAACCTACA 213140 >seq279 Length=200696 Score = 120 bits (132), Expect = 4e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 195619 GAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGC 195678 |||||||||||| | || || | || | ||||| || | || |||||||| | ||| Sbjct 87087 GAAACAATTTGCAGCTGAGGAGGTCTCTGCCATGGTTCTGGTGAAAATGAAGGAAATTGC 87028 Query 195679 GGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAG 195738 ||| || | | || | || || |||| ||||| || || || |||||||||| Sbjct 87027 GGAGTCCTATCTCGGCCACGAAGTCAAGCATGCCGTTGTCACCGTTCCGGCTTACTTCAA 86968 Query 195739 TGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAG 195798 ||| | ||||| || || || ||||| || | | || || ||||| ||| | | || Sbjct 86967 TGACGCTCAACGGCAAGCCACGAAGGATGCCGGAGTCATCGCCGGTCTGAACGTTGTGAG 86908 Query 195799 AATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 || ||||| || || || || ||||||||||||||||| ||||||||||| Sbjct 86907 GATAATCAACGAGCCGACGGCTGCTGCAATTGCTTATGGCCTGGACAAGAA 86857 Score = 98.7 bits (108), Expect = 1e-15 Identities = 181/260 (70%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 196616 GAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGG 196674 ||||||||||| || || | ||||| |||||| | || || | |||||||||||||| Sbjct 85791 GAAGGAGAACGA-CCGATGACGAAGGACAACCATTTGCTGGGCAAATTCGATTTGACGGG 85733 Query 196675 GATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAA 196734 ||||| | || || | || |||||||| ||| | || ||| || || || | || Sbjct 85732 CATTCCTCCGGCTCCTCGCGGCGTTCCACAAATTGAAGTCACCTTTGAGATCGATGTCAA 85673 Query 196735 TGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAA-AAGATTGTGA 196793 ||||||| | |||| || || || ||||| | ||||| ||| ||| ||||| || Sbjct 85672 TGGAATTTTGCACGTGACTGCCGAAGACAAAGGGACTGGC-AATAAGAATAAGATCACGA 85614 Query 196794 TTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGG 196853 | ||||| ||| | ||||| || ||||| || || || ||| | | || |||| Sbjct 85613 TCACCAACGACCACAACCGGCTGTCGCCCGAGGAGATCGAGCGGATGATCAACGACGCGG 85554 Query 196854 AAAAGTACAGGGAAGAAGAC 196873 | |||| | ||||| ||| Sbjct 85553 AGAAGTTCGCAGAAGATGAC 85534 >seq280 Length=416066 Score = 118 bits (130), Expect = 1e-21 Identities = 208/301 (69%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192 ||||| || ||||||||||||||||| |||| ||| || | | | || || || |||||| Sbjct 250518 GAGATCGACTCGTTGTTTGACGGAATCGACTACTACACCAATGTCACGCGCGCTCGTTTT 250577 Query 196193 GAAGAGTTAAACTCTGATTTGTT--TAGGAAGTGTATGGAACCTGTTGAACAAGTACTTC 196250 || ||| | | |||| | || |||| ||||| || ||||| | | | | Sbjct 250578 GAGGAGCTTTGCGCTGACCTCTTCCGTGGAA--CCATGGAGCCGGTTGAGAAGGCGTTGC 250635 Query 196251 GTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCC 196310 | ||||| |||||||| ||||| || | | || || || || || || || || || | Sbjct 250636 GCGACGCGAAGATGGACAAGTCGCAGATCCACGACATCGTGCTGGTCGGCGGGTCTACTC 250695 Query 196311 GTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAA 196370 | ||||||||| | ||| || |||| || ||||||| || || || ||||| Sbjct 250696 GAATTCCGAAGGTGCAAAAGTTGCTGTCCGACTTCTTCTCCGGCAAGGAGTTGAACAAGT 250755 Query 196371 CGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAG 196430 | ||||| || || ||||| || || || || || || ||||| || || || || || | Sbjct 250756 CCATCAATCCTGACGAAGCGGTCGCGTACGGCGCTGCTGTTCAAGCCGCAATCCTTTCCG 250815 Query 196431 G 196431 | Sbjct 250816 G 250816 >seq839 Length=159509 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || || || || || || ||||| || ||||| ||| | Sbjct 77988 ATGCAAATTTTCGTCAAGACGCTCACCGGCAAGACCATCACTCTGGAGGTCGAGGCCAGC 77929 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | ||||||||||| || || ||||| |||||||| || |||||| Sbjct 77928 GACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGATCAG 77869 Query 171982 CAACGACTTATTTTTGCTGGT 172002 || || || || ||||| ||| Sbjct 77868 CAGCGTCTGATCTTTGCCGGT 77848 >seq2265 Length=474335 Score = 96.9 bits (106), Expect = 5e-15 Identities = 136/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 171865 CAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGAC 171924 || || |||||||| || |||| | | || || ||||| || ||||||||| | || Sbjct 171543 CACATTTTTGTGAAGACGCTTAATTGCAAGACCATCACTCTGGAGGTTGAGGCCATCGAT 171484 Query 171925 ACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAA 171984 || ||| | || | || ||||| || || | || | || ||||| ||||| || ||| Sbjct 171483 ACTATCAAAAAGGTGAAGGCCAAAAT-CACGGCAAAGTGGGGATTCCGCCCGAGCAACAA 171425 Query 171985 CGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTT 172044 ||| | || ||||| || ||||||||||| || || | | | | || |||||| || Sbjct 171424 CGATTGATCTTTGCGGGGAAACAGCTTGAGGACATGCGAAGCATGGTGGACTACAACATT 171365 Query 172045 CAAAAGGAGT 172054 |||||||||| Sbjct 171364 CAAAAGGAGT 171355 >seq1156 Length=347766 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/218 (70%), Gaps = 7/218 (3%) Strand=Plus/Plus Query 195638 GAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAA 195697 ||| ||||||| |||||| ||| || ||||||||||| || || | || | || | Sbjct 100331 GAAGTTTCGTCGATGGTGCTGACCAAAATGAAGGAGACGGCCGAGGCCTTTCTTGGCCAG 100390 Query 195698 ACTGTGAAAGATGCAGT------TGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 |||||||| || || || || ||||| || |||||||||| | || || || Sbjct 100391 ACTGTGAAGGACGCCGTGGTCACGGTCACTGTCCCGGCTTACTTCAACAACTCTCAGCGC 100450 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 || | || |||||||||| | || || ||||| ||| || | || ||||| || Sbjct 100451 CA-ACCACCAAGGACGCTGGGTCAATCGCCGGTCTGAACGTGCTGCGCATCATCAACGAG 100509 Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 || || || || || || ||||| || || |||||||| Sbjct 100510 CCGACGGCCGCGGCCATCGCTTACGGCCTTGACAAGAA 100547 >seq1926 Length=508189 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 198558 GGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCG 198617 ||||||||||| | || | ||||| ||||| ||||| ||||| || || | ||| Sbjct 333319 GGTGCTCTTCTGACGGGCCCACCGGGCACTGGGAAAACTCTTCTTGCAAAAGCGACCGCT 333378 Query 198618 GGTGAATCGAGTGTCCCCTTTCTTCAGTGCTCCGCGG--CGAGTTTCATCGAGATGTTCG 198675 || ||| ||| ||| || ||| | || || || | ||| ||| | |||||||||| Sbjct 333379 GGCGAAGCGAATGTGCCTTTTAT-CACTGTGTCGGGTTCCGAATTTT-TGGAGATGTTCG 333436 Query 198676 TTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCAT 198735 |||||||||| | | || ||||| || | || ||| || || |||| || | Sbjct 333437 TTGGTGTTGGGCCGAGTCGAGTCCGTGACATGTTCGAGATGGCCCGGAAAAAAGCGCCTT 333496 Query 198736 GTATCATCTTCATTGATGAGATTGACGCTGTTGGTAAGAAGCGTGGTGGAA 198786 | || | ||||| || |||||||||||||| ||| ||| || || |||| Sbjct 333497 GCATTCTGTTCATCGACGAGATTGACGCTGTGGGTCGGAAACGGGGGGGAA 333547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657805881396560