Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq269 100 3e-15 seq839 87.8 2e-11 >seq269 Length=200655 Score = 100 bits (110), Expect = 3e-15 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 1630183 CCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCC 1630242 || |||||||||||||||||||||||||||||||| | || | ||| ||| | |||||| Sbjct 150896 CCAATGCCGCCGGCCGACTTGGAGATGAGCGCGCAACGATTCAACGTCTCGCAAATGCCC 150955 Query 1630243 TCGATCGAGTCGGCCTTCA-TGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 || || ||||||| || |||| || | ||| || ||||| ||| || | || Sbjct 150956 TCAATGGAGTCGGAGACCATTGTCAAC-AAAAAACAGGACGAAAGTTGAGGACGACATGT 151014 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGC 1630328 ||| || ||||| ||||||||||| || Sbjct 151015 GCCCGCATTGAACAGCGTGGGCGTTGC 151041 >seq839 Length=159509 Score = 87.8 bits (96), Expect = 2e-11 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| |||||| ||| ||||| || ||||||||||| |||||||| | || Sbjct 70195 GCTTGGCCAACTCGCCGGGCAGAATCAGCCGGACGGCGGTCTGAATCTCGCGAGAAGAGA 70254 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| |||| |||| ||| ||||| | ||| ||||| |||| || Sbjct 70255 TGGTAGAGCGTTTGTTGTAGTGTGCCAAACGCGACGCCTCCGCGCCAATGCGCTCGAACA 70314 Query 1254463 TGTCGTTGACAAA 1254475 ||||||||| || Sbjct 70315 CGTCGTTGACGAA 70327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106575169433741