Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1557 111 1e-19 seq93 107 2e-18 seq2872 104 2e-17 seq1709 100 3e-16 seq2265 96.9 3e-15 seq210 91.5 1e-13 seq1893 89.7 5e-13 seq2298 87.8 2e-12 seq839 86.0 6e-12 >seq1557 Length=337913 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||| ||||| || || | || || || | Sbjct 14167 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGATGTGGAGAGTTCG 14226 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||||| || |||| || || || |||||| ||||| || || || || || ||||| Sbjct 14227 GACACAGTTGACAACGTGAAGACGAA-GATCCAGGACAAGGAGGGCATCCCGCCTGATCA 14285 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| ||||||||||||| |||||||| || ||| | | ||| | || || || Sbjct 14286 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAA 14345 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||| ||||| || || || |||||||| Sbjct 14346 CATTCAGAAGGAGTCCACTCTTCACTTGGT 14375 >seq93 Length=214751 Score = 107 bits (118), Expect = 2e-18 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAA-ACGCTAACCGGTAAAA-CTATTACGCTCGAAGTAGAAGCCA 24761 ||||| || ||| | || || || ||||| |||| | || || | || || ||| Sbjct 185017 ATGCAAATTTTTCGTGAAGACACTGACCGGCAAAAACGATCACTTTGGAGGTGGAAAGTT 184958 Query 24762 CCGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||||| || |||| || || || |||||| ||||| || || || || || ||| Sbjct 184957 CGGACACAGTTGACAACGTGAAGACGAA-GATCCAGGACAAGGAGGGCATCCCGCCTGAT 184899 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || ||||| ||||||||||||| |||||||| || ||| | | ||| | || || Sbjct 184898 CAGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTAC 184839 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||| ||||| || || || |||||||| Sbjct 184838 AACATTCAGAAGGAGTCCACTCTTCACTTGGT 184807 >seq2872 Length=49360 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||| ||||| || || | || || || | Sbjct 1721 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGAGGTGGAGAGTTCG 1780 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||||| || |||| || || || |||||| ||||| || || || || || ||||| Sbjct 1781 GACACAGTTGACAACGTGAAGACGAA-GATCCAGGACAAGGAGGGCATCCCGCCTGATCA 1839 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| ||||||||||||| |||||||| || ||| | | ||| | || || || Sbjct 1840 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAA 1899 Query 24883 CATTCAAAAGGAATCGACACTACACT 24908 |||||| ||||| || || || |||| Sbjct 1900 CATTCAGAAGGAGTCCACTCTTCACT 1925 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || || || ||||| ||||| ||||||||||||| ||| Sbjct 2770 AAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAGCAACGGCTGATCTTTGCCGGCAAA 2829 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| || ||| | | ||| | || || |||||||| ||||| || || || ||| Sbjct 2830 CAGCTCGAAGATGGCCGCACGATGGCCGACTACAACATTCAGAAGGAGTCCACTCTTCAC 2889 Query 24908 TTGGT 24912 ||||| Sbjct 2890 TTGGT 2894 >seq1709 Length=109515 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || ||||| ||||| ||||| || || || || || || |||| | Sbjct 18092 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACCATCACTCTGGAGGTTGAGGCCAGC 18151 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||| ||||| || || || || || ||||| Sbjct 18152 GACACCATCGAAAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCGGATCAG 18211 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||||||||||||||||| Sbjct 18212 CAGCGTTTGATCTTTGCCGG 18231 Score = 98.7 bits (108), Expect = 9e-16 Identities = 107/141 (76%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC-AC 24762 ||||| || || | || ||||| ||||| ||||| || || || || || |||||| | Sbjct 13861 ATGCAAATTTTCGTCAAGACGCTCACCGGAAAAACCATCACTCTGGAGGTTGAAGCCTAG 13802 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | |||| || || ||||||||| ||||| || || || || || ||||| Sbjct 13801 CGACACCATCGAAAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCGGATCA 13742 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || ||||||||||||||||| Sbjct 13741 GCAGCGTTTGATCTTTGCCGG 13721 >seq2265 Length=474335 Score = 96.9 bits (106), Expect = 3e-15 Identities = 135/188 (72%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 24707 CAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGAC 24766 || || ||| | || ||||| | | || || || || || || || || |||| ||| Sbjct 171543 CACATTTTTGTGAAGACGCTTAATTGCAAGACCATCACTCTGGAGGTTGAGGCCATCGAT 171484 Query 24767 ACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAA 24826 || | ||| ||| || || ||| | | ||||| || || || ||||| |||||| Sbjct 171483 ACTATCAAAAAGGTGAAGGCCAAAATC-ACGGCAAAGTGGGGATTCCGCCCGAGCAACAA 171425 Query 24827 CGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATT 24886 || ||||||||||| ||||||||||| ||||| | ||| |||| || || |||||| Sbjct 171424 CGATTGATCTTTGCGGGGAAACAGCTTGAGGACATGCGAAGCATGGTGGACTACAACATT 171365 Query 24887 CAAAAGGA 24894 |||||||| Sbjct 171364 CAAAAGGA 171357 >seq210 Length=19051 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || ||||| ||||| || || || || | || || || |||| | Sbjct 8896 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAGACCATCACTTTGGAGGTTGAGGCCAGC 8955 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||| |||||||| || || || || ||||| Sbjct 8956 GACACCATCGAAAACGTGAAGGCAAAGATCCAGGACAAAGAGGGCATCCCGCCGGATCAG 9015 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || |||||||||||||| || Sbjct 9016 CAGCGTTTGATCTTTGCTGG 9035 >seq1893 Length=1815 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || ||||| ||||| ||||| || || || || || || |||| | Sbjct 670 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACCATCACTCTGGAGGTTGAGGCCAGC 611 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA-TCA 24822 ||||| | |||| || || ||||||||| ||||| || || || || || || ||| Sbjct 610 GACACCATCGAAAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCGGAGTCA 551 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || |||||||||||||| || Sbjct 550 GCAGCGTTTGATCTTTGCTGG 530 >seq2298 Length=272061 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AAC 24777 || ||||| ||||| || || || || || || || || || | |||||| | || ||| Sbjct 212954 AAGACGCTTACCGGAAAGACCATCACTCTGGAGGTTGAGGCTAGCGACACTATCGAGAAC 213013 Query 24778 GGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTT 24837 | || | ||| || |||||||||||||| || || | |||| || ||||||| Sbjct 213014 GTGAAGGCCAAA-ATACAAGACAAAGAAGGCATTCCAAGA-AGCAACTGCGGCTGATCTT 213071 Query 24838 TGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATC 24897 ||| |||||||||| || || | ||| |||| || || |||||||||||||| || Sbjct 213072 TGCAAGGAAACAGCTTGAAGACATGCGAAGCATGGTGGACTACAACATTCAAAAGGAGTC 213131 Query 24898 GACACTACA 24906 | ||||| Sbjct 213132 TAACCTACA 213140 >seq839 Length=159509 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || ||||| ||||| || || || || || || || || |||| | Sbjct 77988 ATGCAAATTTTCGTCAAGACGCTCACCGGCAAGACCATCACTCTGGAGGTCGAGGCCAGC 77929 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| || || || || || ||||| Sbjct 77928 GACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGATCAG 77869 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||| ||||||||||||| Sbjct 77868 CAGCGTCTGATCTTTGCCGG 77849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449858948172440