Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq451 86.0 5e-12 >seq451 Length=406602 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34507 GCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCG 34566 ||||| |||| |||| ||| || |||| |||||||| || || || ||||| ||||| Sbjct 64765 GCCTTCGCGACGTCGGACATATTTGCGATAACAGTCTTAATACCATTTCCCTTGCCTTCA 64824 Query 34567 ACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGGTTA 34626 || || || | ||||| |||||||||||||| || || | || |||| |||||| Sbjct 64825 ACTTTTGCCAAAATGCGAGGCATTTTGTAGCGATAAAAGGGATCATGCACACCACGGTTA 64884 Query 34627 ACGTT 34631 ||||| Sbjct 64885 ACGTT 64889 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34507 GCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCG 34566 ||||| |||| |||| ||| || |||| |||||||| || || || ||||| ||||| Sbjct 66337 GCCTTCGCGACGTCGGACATATTTGCGATAACAGTCTTAATACCATTTCCCTTGCCTTCA 66278 Query 34567 ACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGGTTA 34626 || || || | ||||| |||||||||||||| || || | || |||| |||||| Sbjct 66277 ACTTTTGCCAAAATGCGAGGCATTTTGTAGCGATAAAAGGGATCATGCACACCACGGTTA 66218 Query 34627 ACGTT 34631 ||||| Sbjct 66217 ACGTT 66213 Score = 86.0 bits (94), Expect = 5e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 ||| |||| ||||| ||||| || |||||| | |||||| || | || || || || Sbjct 66578 AGCACAGTTTCCGGATTGTCGCAACTCGGACAAAGCACAAATTTCCTAATAAATCCGTCC 66519 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 | | ||| || | ||| || || || |||||||||||| | ||||||||||| Sbjct 66518 AAAATGTCTTGAAGTTTATTGGCATCATGTTCCCCGTTGACGATGTAGCGTTCGTTTTTC 66459 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 ||| | | |||||||| |||||||| || || || || |||||||| Sbjct 66458 AGATCAAAGTTAGTTTGCGCTCCCAGCTCACAACCAAAATATTTTGTCGG 66409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412807018452389