Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq839 114 2e-19 seq269 114 2e-19 seq2552 98.7 2e-14 seq3043 96.9 5e-14 >seq839 Length=159509 Score = 114 bits (126), Expect = 2e-19 Identities = 131/174 (75%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| || ||||||||| |||||| |||||| ||| Sbjct 70156 TGTACTTCGTCACTGCCTTCGTCCCCTCGGAAACGGCGTGCTTGGCCAACTCGCCGGGCA 70215 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 ||||| || ||||||||||| |||||||| | ||| || ||| |||| |||| Sbjct 70216 GAATCAGCCGGACGGCGGTCTGAATCTCGCGAGAAGAGATGGTAGAGCGTTTGTTGTAGT 70275 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAA 1485641 | || | ||| | ||||| | ||| ||||| |||| || ||||||||| || Sbjct 70276 GTGCCAAACGCGAC--GCCTCCGCGCCAATGCGCTCGAACACGTCGTTGACGAA 70327 >seq269 Length=200655 Score = 114 bits (126), Expect = 2e-19 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 2073658 CCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCC 2073717 || ||||||||||||| |||||||||||||||||| |||| ||||||| | |||||| Sbjct 150896 CCAATGCCGCCGGCCGACTTGGAGATGAGCGCGCAACGATTCAACGTCTCGCAAATGCCC 150955 Query 2073718 TCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTG 2073777 || || ||||||| ||| ||||| ||| || ||||| ||| || || ||| Sbjct 150956 TCAATGGAGTCGGAGACCATTGTCAACAAAAAACAGGACGAAAGTTGAGGACGACATGTG 151015 Query 2073778 CCGGCATTGAAGAGCGTGGGCGTCGC 2073803 || |||||||| ||||||||||| || Sbjct 151016 CCCGCATTGAACAGCGTGGGCGTTGC 151041 >seq2552 Length=267837 Score = 98.7 bits (108), Expect = 2e-14 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || || || ||||| || ||||| |||||||||||| | |||| |||||| ||| Sbjct 179333 TGTATTTCGTCACCGCCTTTGTCCCCTCGGAGACGGCGTGCTTAGCCAACTCGCCGGGCA 179392 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || || || |||||||| ||||||| ||| || |||||||| Sbjct 179393 GAATCAGCCGGACCGCAGTCTGGATTTCGCGGGACGAGATGGTCGAACGCTTGTTGTAAT 179452 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAA 1485641 ||||||| || ||||| | || ||||| || | || ||||||||| || Sbjct 179453 GCGCCAGACGAGAAGCCTCCGCACCAATGCGCTCAAACACGTCGTTGACGAA 179504 >seq3043 Length=241195 Score = 96.9 bits (106), Expect = 5e-14 Identities = 127/174 (73%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || || || |||||||||||| | |||| ||||||| ||| Sbjct 171446 TGTACTTCGTCACCGCCTTTGTCCCTTCGGAGACGGCGTGCTTAGCCAATTCGCCGGGCA 171505 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTG--CGCTTGTTAGT 1485587 ||||| || || || |||||||| |||||| | ||| |||| |||||||| Sbjct 171506 GAATCAGCCGGACCGCAGTCTGGATTTCGCGG--GACGAAATGGTTGAACGCTTGTTGTA 171563 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAA 1485641 ||||||| || ||||| | || ||||| || | || |||||||| || Sbjct 171564 ATGCGCCAGACGAGAAGCCTCCGCACCAATGCGCTCAAACACATCGTTGACGAA 171617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915515287642247