Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq279 100 2e-15 >seq279 Length=200696 Score = 100 bits (110), Expect = 2e-15 Identities = 191/276 (69%), Gaps = 9/276 (3%) Strand=Plus/Plus Query 282608 TTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 282667 |||| ||| |||||||||||| |||||| || ||||| | | ||| | || || Sbjct 87183 TTAA-AACCTTAAATGGCCAAAGTTTCATGTCGTCCTGAACGGTCTTGTCGGTGAACTCC 87241 Query 282668 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG-CAGCTTGATA 282726 | || || | |||||| ||||||||||| || || || || | || |||| || | Sbjct 87242 CGTCCGATGAGTCGTTTGGCATCAAAAATGGTGTTTTCAGGGTTCAGTGTCAGC-TGGTT 87300 Query 282727 TTTGGCTGCATCTCCAATCAGATGTT---CTGTCTC---TGTAAATGAAACATATGATGG 282780 ||||| |||||||| |||| ||| | ||||| ||||| | ||| || ||||| Sbjct 87301 CTTGGCCGCATCTCCGATCAACCGTTCGCCAGTCTCCGGCGTAAACGCAACGTAGGATGG 87360 Query 282781 AGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC 282840 || | || || || || || || || ||||| |||||| | ||||||| | || || Sbjct 87361 CGTGATCCGGTTCCCCTGGTCGTTGGCGATAATCTCAACTCTGCCATTTTTGTAGACGCC 87420 Query 282841 TACACAACTAAAAGTTGTTCCTAAATCAATACCAAT 282876 |||||| | | || || || | ||||| ||||| Sbjct 87421 AACACAAGAATAGGTGGTGCCCAGGTCAATGCCAAT 87456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740292964745298