Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30]
6,873 sequences; 123,625,196 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq279 100 2e-15
>seq279
Length=200696
Score = 100 bits (110), Expect = 2e-15
Identities = 191/276 (69%), Gaps = 9/276 (3%)
Strand=Plus/Plus
Query 282608 TTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 282667
|||| ||| |||||||||||| |||||| || ||||| | | ||| | || ||
Sbjct 87183 TTAA-AACCTTAAATGGCCAAAGTTTCATGTCGTCCTGAACGGTCTTGTCGGTGAACTCC 87241
Query 282668 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG-CAGCTTGATA 282726
| || || | |||||| ||||||||||| || || || || | || |||| || |
Sbjct 87242 CGTCCGATGAGTCGTTTGGCATCAAAAATGGTGTTTTCAGGGTTCAGTGTCAGC-TGGTT 87300
Query 282727 TTTGGCTGCATCTCCAATCAGATGTT---CTGTCTC---TGTAAATGAAACATATGATGG 282780
||||| |||||||| |||| ||| | ||||| ||||| | ||| || |||||
Sbjct 87301 CTTGGCCGCATCTCCGATCAACCGTTCGCCAGTCTCCGGCGTAAACGCAACGTAGGATGG 87360
Query 282781 AGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC 282840
|| | || || || || || || || ||||| |||||| | ||||||| | || ||
Sbjct 87361 CGTGATCCGGTTCCCCTGGTCGTTGGCGATAATCTCAACTCTGCCATTTTTGTAGACGCC 87420
Query 282841 TACACAACTAAAAGTTGTTCCTAAATCAATACCAAT 282876
|||||| | | || || || | ||||| |||||
Sbjct 87421 AACACAAGAATAGGTGGTGCCCAGGTCAATGCCAAT 87456
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740292964745298
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |