Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq1544 104 2e-17 >seq1544 Length=2721 Score = 104 bits (114), Expect = 2e-17 Identities = 114/148 (77%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 69445 AACATCGTCTTCGGCGTGGGCTCCTACACCTACCAGATGAACACCCGCGACACCCTCGGC 69504 |||||||| ||||| || ||||| |||||||||||| | ||| || ||||| ||||| Sbjct 804 AACATCGTGTTCGGTGTAGGCTCGTACACCTACCAGTACATCACTCGTGACACGTTCGGC 745 Query 69505 TCCGCCATGAAGGCTACCTGGGCAGAGGTCAACGG-CAAGGGCGTGAACCTTCTGAAAGA 69563 || || |||||||| |||| | |||| ||||| |||| ||| ||| | | |||||| Sbjct 744 ATGGCTATCAAGGCTACGTGGG-ACAGGTGAACGGTGAAGGTCGT-AACATCCAGAAAGA 687 Query 69564 CCCGGTCACCGACGACGGGACGAAGAAG 69591 |||| |||| |||||| | ||||||| Sbjct 686 CCCGAAGACCGGCGACGGTATGAAGAAG 659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340093109820464