Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq210 87.8 4e-12 seq1012 84.2 4e-11 >seq210 Length=19051 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| | | || ||||| || || || || || || || || |||||||| Sbjct 9035 CCAGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATCTTTGCC 8976 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || ||||| || || || | | || || |||||||| || |||||||| || | | Sbjct 8975 TTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAAAGTGATGGTCTTGCCGGTAAGC 8916 Query 82791 GTCTTTACAAATATCTGCATTAT 82813 ||||| || || || ||||| || Sbjct 8915 GTCTTCACGAAAATTTGCATGAT 8893 >seq1012 Length=142389 Score = 84.2 bits (92), Expect = 4e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 82648 TTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTC 82707 ||| |||||| |||||||||||| | ||||| || | ||||||||| | || || | Sbjct 141451 TTCGACCGTCGCATAGTTGTTTTCCGTCGAAGATCAGACGTTGTTGATCCAGGGGAATGC 141510 Query 82708 CTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCA 82767 |||| || | || ||||| || || || || || || || || || | || || |||| Sbjct 141511 CTTCTTTCTTCTGGATCTTCGCCTTCACGTTCTCGATGGTGTCGTTGGCCTCAACCTCCA 141570 Query 82768 AAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTAT 82816 |||| || || | | || || ||||| ||||| || || || || || Sbjct 141571 AAGTGATGGTAATACTTGCCACTGTCTTCACAAAAATTTGTATGATGAT 141619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981740739989947