Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2872 136 4e-27 seq1557 136 4e-27 seq93 123 2e-23 seq269 98.7 1e-15 seq1709 93.3 4e-14 seq1893 86.0 6e-12 >seq2872 Length=49360 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| |||||||| | | | || |||||||| ||||| Sbjct 1917 GTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCA-TCTTCGAGCTGTTTGCC 1859 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || ||||| ||||| || || |||||||| |||||||| |||||| ||| Sbjct 1858 GGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTT 1799 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | |||||| || | |||| |||||||||||||| || Sbjct 1798 CACGTTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGTCAGTGT 1739 Query 133643 TTTTACGAAAATCTGCATG 133661 || |||||||| |||||| Sbjct 1738 CTTCACGAAAATTTGCATG 1720 >seq1557 Length=337913 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| |||||||| | | | || |||||||| ||||| Sbjct 14363 GTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCA-TCTTCGAGCTGTTTGCC 14305 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || ||||| ||||| || || |||||||| |||||||| |||||| ||| Sbjct 14304 GGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTT 14245 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | |||||| || | |||| |||||||||||||| || Sbjct 14244 CACGTTGTCAACTGTGTCCGAACTCTCCACATCCAAAGTGATCGTTTTGCCGGTCAGTGT 14185 Query 133643 TTTTACGAAAATCTGCATG 133661 || |||||||| |||||| Sbjct 14184 CTTCACGAAAATTTGCATG 14166 >seq93 Length=214751 Score = 123 bits (136), Expect = 2e-23 Identities = 151/201 (75%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| |||||||| | | | || |||||||| ||||| Sbjct 184819 GTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCA-TCTTCGAGCTGTTTGCC 184877 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || ||||| ||||| || || |||||||| |||||||| |||||| ||| Sbjct 184878 GGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTT 184937 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA-CGGTTTTGCCGGTCAGAG 133641 | | ||||| ||||| | ||||| || | |||| || ||||||||||||| | Sbjct 184938 CACGTTGTCAACTGTGTCCGAACTTTCCACCTCCAAAGTGATCGTTTTTGCCGGTCAGTG 184997 Query 133642 TTTTTACG-AAAATCTGCATG 133661 | || ||| ||||| |||||| Sbjct 184998 TCTTCACGAAAAATTTGCATG 185018 >seq269 Length=200655 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 148810 ATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACT 148869 ||||||| | || || ||||| | |||||||| || ||||||||||| | || | Sbjct 149908 ATCGGTTAAGCGCAATGGAGGCCAAGTTGCACACAGCGGTCTCATCCGGTGACGAATATT 149967 Query 148870 CTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCT 148929 | | ||| |||| ||||| ||| |||||| || ||||| ||| | ||||| || Sbjct 149968 CAATGATTTCGGTGCACAAATTTGAGCATTTTATGGTGCCCAAGTTTTGCTGATTTGACT 150027 Query 148930 TGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 | | ||||||||||||||| ||| ||||||||| ||| || ||| ||||| Sbjct 150028 TCCGATTGCACGCGTCCTTGAACAACATGTACGGCGTGCCGGTCTCCGTCTGCG 150081 >seq1709 Length=109515 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 |||||||| || || |||||||| |||||||| ||||||| ||| | | || | Sbjct 18216 CGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTTTCGATG 18157 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 |||||| ||| ||| || || | |||| |||||||||||| || || || |||||||| Sbjct 18156 GTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAGCGTCTTCACGAAAATT 18097 Query 133656 TGCATG 133661 |||||| Sbjct 18096 TGCATG 18091 >seq1893 Length=1815 Score = 86.0 bits (94), Expect = 6e-12 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 133536 CGCTGCTGG-TCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAAC 133594 |||||||| || || |||||||| |||||||| ||||||| ||| | | || | Sbjct 545 CGCTGCTGACTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTTTCGAT 604 Query 133595 CGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAAT 133654 |||||| ||| ||| || || | |||| |||||||||||| || || || |||||||| Sbjct 605 GGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAGCGTCTTCACGAAAAT 664 Query 133655 CTGCATG 133661 |||||| Sbjct 665 TTGCATG 671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483379268110520