Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq93 123 6e-23 seq2872 120 7e-22 seq1557 120 7e-22 >seq93 Length=214751 Score = 123 bits (136), Expect = 6e-23 Identities = 142/190 (75%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGG-AAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 || || || || || |||||||||||||||||| ||||||||||| |||||||| || Sbjct 185001 AAGACACTGACCGGCAAAAACGATCACTTTGGAGGTGGAAAGTTCGGACACAGTTGACAA 184942 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || || || || ||| || ||| | || ||||| Sbjct 184941 CGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAGCAACGGCTGATCTT 184882 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || ||| | |||||||| | || ||||||| |||||| | ||||| ||||| Sbjct 184881 TGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAACATTCAGAAGGAGTC 184822 Query 206364 TACTCTTCAC 206373 ||||||||| Sbjct 184821 CACTCTTCAC 184812 >seq2872 Length=49360 Score = 120 bits (132), Expect = 7e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||||||||||||||| ||||| ||||| |||||||| || Sbjct 1736 AAGACACTGACCGGCAAAACGATCACTTTGGAGGTGGAGAGTTCGGACACAGTTGACAAC 1795 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||| || ||| | || ||||| Sbjct 1796 GTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAGCAACGGCTGATCTTT 1855 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || ||| | |||||||| | || ||||||| |||||| | ||||| ||||| Sbjct 1856 GCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAACATTCAGAAGGAGTCC 1915 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 1916 ACTCTTCAC 1924 >seq1557 Length=337913 Score = 120 bits (132), Expect = 7e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||||||||||||||| ||||| ||||| |||||||| || Sbjct 14182 AAGACACTGACCGGCAAAACGATCACTTTGGATGTGGAGAGTTCGGACACAGTTGACAAC 14241 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||| || ||| | || ||||| Sbjct 14242 GTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAGCAACGGCTGATCTTT 14301 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || ||| | |||||||| | || ||||||| |||||| | ||||| ||||| Sbjct 14302 GCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAACATTCAGAAGGAGTCC 14361 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 14362 ACTCTTCAC 14370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181716728491033