Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_025470.1 Length=139004 Score E Sequences producing significant alignments: (Bits) Value seq1860 104 2e-17 >seq1860 Length=1884 Score = 104 bits (114), Expect = 2e-17 Identities = 423/656 (64%), Gaps = 27/656 (4%) Strand=Plus/Minus Query 16057 GGGTTTAGCCGTTCCACCTCACCAGCAGAAGTTAACTGTGTATACACCATAGCTGGATCA 16116 ||||| | || || || ||||| |||||||| ||||||||| ||| || | | Sbjct 1359 GGGTTCACTCGGTCTACGTCACCGGCAGAAGTCTTCTGTGTATAGCTCATGGCAAGCGTA 1300 Query 16117 GGGTTGATACCTTCACTGACACCACCCATTATTAATGCTGTAGATTTAGTGGGGGCAATA 16176 | |||||||||||| | |||||| || || || || ||||| || || |||| | Sbjct 1299 GTGTTGATACCTTCTTCAATACCACCGTAAATCAACGCAGTGGATTTGGTTGGAGCAACA 1240 Query 16177 GCTC--TTGTGTGTGTATTACGAGTACCATAACCCTTACACCATTCTGGTTCTCCTAGGT 16234 || ||||| ||| | || ||||||||| || ||||| || || ||||| || | Sbjct 1239 GCCAAATTGTGAGTGAAG--CGTACACCATAACCTTTGCACCACTCAGGCTCTCCCAGTT 1182 Query 16235 GGTACGCCATATACTTGCTAGCCTTCTCTGAATCCCTTTTCATTTGACTGAATA---TGA 16291 | |||| || | || | | || | | |||||| || |||| | ||| Sbjct 1181 CTTTAGCCAGCCACCTCGACGCATCCATAGACTGCTCTTTCATCTGCTTGAACACTTTGA 1122 Query 16292 TATTATTAAGTAAATGTGCTTCCAGACTTTCAAAAGGTAACATTTTTTGTTGGTATA-AT 16350 | || | | || || || | || || | || | ||| | ||| || | | Sbjct 1121 TGTTCCACATT---TGAGCATCAATGCTCTCGTACGGAATCATGTGGGATTG-TAGATAG 1066 Query 16351 GTGTGTAAACCACAAGCACCTAAACCTAATGCACGACTTTTCTTAGTAAATGCAACAGCT 16410 || || | |||| || |||| || | ||||| | | ||| || |||||| Sbjct 1065 GTATGATATCCACCGGCCCCTAGTCCAATAGCACGTCCAGCTTCAGTTGCAGCTACAGCT 1006 Query 16411 TTTTCTAACCCACTAATTTTACTTGCTAGGTCGATGAAATTCTCAG---CTATGCAGTCT 16467 || || | ||| ||| | ||||| | |||||||| ||||| | | ||| || Sbjct 1005 TTCTCCAGCCCCGGAATCTGCTTTGCTTGTTCGATGAA---CTCAGACACAACGCAATCA 949 Query 16468 AGGAATACAGTTGCTTCAAACACAGCCAAAGTATCTTTCCACTCATCGTATTTAGACAGG 16527 ||||| ||||| || | |||| || ||| |||||||||||||| | || |||| | Sbjct 948 AGGAACACAGTAGCAACGTACACTGCATCAGTGTCTTTCCACTCATCCCACTTCGACATG 889 Query 16528 TTCATAGAACTTAATACACAAGTATATGTATATT---GTGGACTACTGTGTAACATGATC 16584 ||||| || | ||||||||||| || |||| || | ||||| | | ||| Sbjct 888 TTCATCCAAGCAAGCACACAAGTATAGGTGTATTTGGCTGCATCGCTGTGCAGGAAGATT 829 Query 16585 TCCGCACAGAGTTGAGGTG-CTTCA--ATTGCCAACCCTAAATCTTTGTACATTTTCGGT 16641 || | || || || | || ||||| || || || ||||| |||||||| | || Sbjct 828 TCGGTGCAAAGCTGCGATGCCTTCACCAT---CAGTCCCAAATCCTTGTACATCTCAGGA 772 Query 16642 CGTTGTCGGTTAGCTTTATCCTTAAAGAAAAAGTAACCTTTACCTGTAATCATTTT 16697 || | ||||| |||| || | ||||| ||||| |||||||| || | ||| || Sbjct 771 CGATTACGGTTCACTTTGTCGATGAAGAAGAAGTAGCCTTTACCAGTTACCATCTT 716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444646596017120