Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2872 100 3e-16 seq1557 100 3e-16 seq269 100 3e-16 seq93 84.2 2e-11 >seq2872 Length=49360 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||| ||| || || ||||||||||||||| |||| | Sbjct 1914 GACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCA 1855 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || || || ||||| || || ||||| || || || || || |||| Sbjct 1854 AAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTCACG 1795 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || || || || | |||||| || | || | |||||| || ||||| || || Sbjct 1794 TTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTC 1735 Query 132110 ATGAAAATCTGCATG 132124 | |||||| |||||| Sbjct 1734 ACGAAAATTTGCATG 1720 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||| ||| || || ||||||||||||||| |||| | Sbjct 2879 GACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCA 2820 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||| || || || ||||| || || ||||| || || || Sbjct 2819 AAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTC 2779 >seq1557 Length=337913 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||| ||| || || ||||||||||||||| |||| | Sbjct 14360 GACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCA 14301 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || || || ||||| || || ||||| || || || || || |||| Sbjct 14300 AAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTCACG 14241 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || || || || | |||||| || | || | |||||| || ||||| || || Sbjct 14240 TTGTCAACTGTGTCCGAACTCTCCACATCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTC 14181 Query 132110 ATGAAAATCTGCATG 132124 | |||||| |||||| Sbjct 14180 ACGAAAATTTGCATG 14166 >seq269 Length=200655 Score = 100 bits (110), Expect = 3e-16 Identities = 124/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 147449 ATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTAC 147507 || |||| | || || || |||| ||||| || || ||||| || || | || || Sbjct 149908 ATCGGTTAAGCGCAATGGAGGCCAAGTTGCACACAGCGGTCTCATCCGGTGACGAA-TAT 149966 Query 147508 TGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTT 147567 | | |||||||| ||||| || |||||||||| ||||| ||||||||||| Sbjct 149967 TCAATGATTTCGGTGCACAAATTTGAGCATTTTATGGTGCCCAAGTTTTGCTGATTTGAC 150026 Query 147568 TTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 ||||||||||||||||| ||||| | ||||||||| ||||||||| Sbjct 150027 TTCCGATTGCACGCGTCCTTGAACAACATGTACGGCGTGCCGGTCTC 150073 >seq93 Length=214751 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||| ||| || || ||||||||||||||| |||| | Sbjct 184822 GACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCA 184881 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||| || || || ||||| || || ||||| || || || Sbjct 184882 AAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTC 184922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476570253140280