Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq839 111 2e-18 seq2552 98.7 1e-14 seq269 96.9 5e-14 seq3043 93.3 6e-13 >seq839 Length=159509 Score = 111 bits (122), Expect = 2e-18 Identities = 118/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 724989 TTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT--GGCGCGCTCCA 725046 || ||||||||| || |||| ||||| ||| | ||||| ||||| | ||| | || || Sbjct 70327 TTCGTCAACGACGTGTTCGAGCGCATTGGCGCGGAGGC--GTCGCGTTTGGCACACTACA 70270 Query 725047 ACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCG 725106 |||| ||| || ||| | |||||||| ||||||||||| || ||||| ||| || Sbjct 70269 ACAAACGCTCTACCATCTCTTCTCGCGAGATTCAGACCGCCGTCCGGCTGATTCTGCCCG 70210 Query 725107 GCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||| |||||| ||||||||| |||||||| || Sbjct 70209 GCGAGTTGGCCAAGCACGCCGTTTCCGAGGGGAC 70176 >seq2552 Length=267837 Score = 98.7 bits (108), Expect = 1e-14 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 724989 TTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAAC 725048 || ||||||||| || | || ||||| || | ||||| ||| ||||||| | |||| Sbjct 179504 TTCGTCAACGACGTGTTTGAGCGCATTGGTGCGGAGGCTTCTCGTCTGGCGCATTACAAC 179445 Query 725049 AAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGC 725108 ||||| || ||| | ||||| |||||||| || || || ||||| ||| |||| Sbjct 179444 AAGCGTTCGACCATCTCGTCCCGCGAAATCCAGACTGCGGTCCGGCTGATTCTGCCCGGC 179385 Query 725109 GAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || |||| | |||||||||||||||||| || Sbjct 179384 GAGTTGGCTAAGCACGCCGTCTCCGAGGGGAC 179353 >seq269 Length=200655 Score = 96.9 bits (106), Expect = 5e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || ||||||||||| || ||||| ||||| || || || |||||| || ||| || Sbjct 151041 GCAACGCCCACGCTGTTCAATGCGGGCACATGTCGTCCTCAACTTTCGTCCTGTTTTTTG 150982 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 ||| ||| |||| || || |||||||| | || ||| | || | ||||||||| Sbjct 150981 TTGACAATGGTCTCCGACTCCATTGAGGGCATTTGCGAGACGTTGAATCGTTGCGCGCTC 150922 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGG 260064 ||||||||| ||||||||||||| || Sbjct 150921 ATCTCCAAGTCGGCCGGCGGCATTGG 150896 >seq3043 Length=241195 Score = 93.3 bits (102), Expect = 6e-13 Identities = 114/154 (74%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 724989 TTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAAC 725048 || |||||||| || | || ||||| || | ||||| ||| ||||||| | |||| Sbjct 171617 TTCGTCAACGATGTGTTTGAGCGCATTGGTGCGGAGGCTTCTCGTCTGGCGCATTACAAC 171558 Query 725049 AAGCG--CAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCG 725106 ||||| |||| ||| | |||| | |||||||| || || || ||||| ||| || Sbjct 171557 AAGCGTTCAACCATTTCGTCCCGCG--AAATCCAGACTGCGGTCCGGCTGATTCTGCCCG 171500 Query 725107 GCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| |||| | ||||||||||||||| || || Sbjct 171499 GCGAATTGGCTAAGCACGCCGTCTCCGAAGGGAC 171466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177148286517426