Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2872 118 1e-21 seq93 114 1e-20 seq1557 113 4e-20 seq820 107 2e-18 seq593 93.3 4e-14 >seq2872 Length=49360 Score = 118 bits (130), Expect = 1e-21 Identities = 146/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| ||||||| || || | || || ||||| || || ||||| Sbjct 1912 CTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAA 1853 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||| ||||| || | || | || |||||||||| |||||| ||||| || Sbjct 1852 GATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTCA-CGT 1794 Query 35665 TG-CCACCGTGTCGCTCGA---TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 || | || ||||| ||| |||||||||| ||||||||||| || |||| || | Sbjct 1793 TGTCAACTGTGTC---CGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGTCAGTGTCT 1737 Query 35721 TCACAAATATCTGCAT 35736 |||| || || ||||| Sbjct 1736 TCACGAAAATTTGCAT 1721 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| ||||||| || || | || || ||||| || || ||||| Sbjct 2877 CTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAA 2818 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 |||| ||| ||||| || | || | || |||||||||| |||||| Sbjct 2817 GATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTT 2770 >seq93 Length=214751 Score = 114 bits (126), Expect = 1e-20 Identities = 148/198 (75%), Gaps = 10/198 (5%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| ||||||| || || | || || ||||| || || ||||| Sbjct 184824 CTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAA 184883 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||| ||||| || | || | || |||||||||| |||||| ||||| || Sbjct 184884 GATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTCA-CGT 184942 Query 35665 TG-CCACCGTGTCGCTCGA---TTCCACCTCCACCGTGATCG-TTTTACCCGTCAAAGTT 35719 || | || ||||| ||| ||||||||||| ||||||| |||| || |||| || Sbjct 184943 TGTCAACTGTGTC---CGAACTTTCCACCTCCAAAGTGATCGTTTTTGCCGGTCAGTGTC 184999 Query 35720 TTCAC-AAATATCTGCAT 35736 ||||| ||| || ||||| Sbjct 185000 TTCACGAAAAATTTGCAT 185017 >seq1557 Length=337913 Score = 113 bits (124), Expect = 4e-20 Identities = 145/196 (74%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| ||||||| || || | || || ||||| || || ||||| Sbjct 14358 CTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAA 14299 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||| ||||| || | || | || |||||||||| |||||| ||||| || Sbjct 14298 GATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTCA-CGT 14240 Query 35665 TG-CCACCGTGTCGCTCGA---TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 || | || ||||| ||| ||||| |||| ||||||||||| || |||| || | Sbjct 14239 TGTCAACTGTGTC---CGAACTCTCCACATCCAAAGTGATCGTTTTGCCGGTCAGTGTCT 14183 Query 35721 TCACAAATATCTGCAT 35736 |||| || || ||||| Sbjct 14182 TCACGAAAATTTGCAT 14167 >seq820 Length=160256 Score = 107 bits (118), Expect = 2e-18 Identities = 144/195 (74%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||||||||| || ||||| || || || | || ||||| || |||||||| Sbjct 13159 TCCTTTTGAATGTTGTAGTCAGCCAAAGTGCGGTCATTATCGAGCTGTTTGCCCGCAAAG 13100 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||| || ||| | | || | || ||| ||||| || ||| || ||||| ||| Sbjct 13099 ATCAGCCGTTGTTGGCCAGTTGGGATGCCTTCCGTGTCCTGGACCTTCTGTTTCAG-GTT 13041 Query 35666 G-CCACCGTGTCGCTCGAT-TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | ||||| | | | |||||||||| | || | ||| |||||||||||||||| Sbjct 13040 GTTGATGGTGTC-CGAGCTGTCCACCTCCAATGCCATGGCTTTTCCCGTCAAAGTTTTCA 12982 Query 35724 CAAATATCTGCATTC 35738 | || | ||||||| Sbjct 12981 CGAAAACTTGCATTC 12967 >seq593 Length=9788 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| ||| | | |||| || ||||| || || ||||| Sbjct 7128 CTCCTTCTGAATGTTGTAGTCGGTCAAAGCAAGACCGTCTTCGAGCTGTTTTCCGGCAAA 7069 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCA 35660 ||||| | |||||| || || |||| || |||||||||| ||||||| ||||| Sbjct 7068 GATCAAACTCTGCTGATCAGACGGAATGCGCTCCTTGTCCTGGATCTTTGCCTTCA 7013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450754871194840