Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1557 131 2e-25 seq2872 129 6e-25 seq93 122 9e-23 seq820 102 8e-17 seq1709 95.1 1e-14 seq593 93.3 4e-14 seq2298 86.0 6e-12 seq210 86.0 6e-12 seq1893 84.2 2e-11 seq839 84.2 2e-11 >seq1557 Length=337913 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || ||||| ||||| ||||||||||||||| | Sbjct 14393 CCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCC 14334 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||||||||| ||||| |||| || |||||||| ||||| Sbjct 14333 ATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGG 14274 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || ||| | |||||| || ||||| Sbjct 14273 ATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACA 14214 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| || ||||| ||||| | || || |||||||||||||| Sbjct 14213 TCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCAT 14167 >seq2872 Length=49360 Score = 129 bits (142), Expect = 6e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||||| ||||| ||||||||||||||| | | ||| | || |||||||| Sbjct 1924 GTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTG 1865 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 |||||| ||||| |||| || |||||||| ||||| ||||| || || || || || || Sbjct 1864 TTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTT 1805 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || ||| | |||||| || ||||| || | ||| || ||||| ||||| Sbjct 1804 CGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGT 1745 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || || |||||||||||||| Sbjct 1744 CAGTGTCTTCACGAAAATTTGCAT 1721 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || ||||| ||||| ||||||||||||||| | Sbjct 2912 CCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCC 2853 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||||||||| ||||| |||| || |||||||| ||||| Sbjct 2852 ATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGG 2793 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || || || || || Sbjct 2792 ATGCCCTCCTTGTCCTGGATCTT 2770 >seq93 Length=214751 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || ||||| ||||| ||||||||||||||| | Sbjct 184789 CCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCC 184848 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||||||||| ||||| |||| || |||||||| ||||| Sbjct 184849 ATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGG 184908 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || ||| | |||||| || |||||| Sbjct 184909 ATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTTTCCACC 184968 Query 134667 TCGAGAGTAAT-GGTTTTACCGGTTAAAGTTTTAACG-AAAATTTGCAT 134713 || | ||| || | |||| ||||| | || || ||| ||||||||||| Sbjct 184969 TCCAAAGTGATCGTTTTTGCCGGTCAGTGTCTTCACGAAAAATTTGCAT 185017 >seq820 Length=160256 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 ||| || | ||| |||| || || || ||||| | |||||||||||||||||||| || Sbjct 13196 TCCGCCCCGGAGGCGCAGCAGCAGATGAAGCGTTGCGTCCTTTTGAATGTTGTAGTCAGC 13137 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| | || | | |||||||||||||| ||||| |||| || || || | | | Sbjct 13136 CAAAG-TGCGGTCATTATCGAGCTGTTTGCCCGCAAAGATCAGCCGTTGTTGGCCAGTTG 13078 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| | || || | || ||||| | || | ||||| || |||| Sbjct 13077 GGATGCCTTCCGTGTCCTGGACCTTCTGTTTCAGGTTGTTGATGGTGTCCGAGCTGTCCA 13018 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || | | |||| ||| || || |||||||| ||||||| ||||||| Sbjct 13017 CCTCCAATGCCATGGCTTTTCCCGTCAAAGTTTTCACGAAAACTTGCATT 12968 >seq1709 Length=109515 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| ||||||||||||||||| ||||| ||||| || || || || || ||| Sbjct 13721 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCC 13780 Query 134634 TTGACCGCGTCCAATGTGTCG-GACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAA 134692 || || || | |||||| | | ||| || || ||||| |||||||| ||||| | Sbjct 13781 TTCACGTTTTCGATGGTGTCGCTAGGCTTCAACCTCCAGAGTGATGGTTTTTCCGGTGAG 13840 Query 134693 AGTTTTAACGAAAATTTGCATT 134714 || || ||||||||||||||| Sbjct 13841 CGTCTTGACGAAAATTTGCATT 13862 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| ||||||||||||||||| ||||| ||||| || || || || || ||| Sbjct 18231 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCC 18172 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | |||||| | || || || ||||| |||||||| ||||| | Sbjct 18171 TTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAGC 18112 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || |||||||||||||| Sbjct 18111 GTCTTCACGAAAATTTGCAT 18092 >seq593 Length=9788 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || ||| ||| || || ||||| ||||| ||||||||||||||| Sbjct 7163 CCACCACGGAGACGAGACAAGAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGTC 7104 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | | || ||| ||||||||||| || ||||| ||||||| ||||||||| | ||| Sbjct 7103 AAAGCAAGACCGTCTTCGAGCTGTTTTCCGGCAAAGATCAAACTCTGCTGATCAGACGGA 7044 Query 134607 ATGCCTTCTTTTTCTTGAATTTTT 134630 |||| || || || || || ||| Sbjct 7043 ATGCGCTCCTTGTCCTGGATCTTT 7020 >seq2298 Length=272061 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 ||||| | || |||||||||||||||||||| | | | | | ||| || |||||| Sbjct 213140 TGTAGGTTAGACTCCTTTTGAATGTTGTAGTCCACCATGCTTCGCATGTCTTCAAGCTGT 213081 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || | |||||| |||| ||| | || | || ||||||||||| ||||| ||||| Sbjct 213080 TTCCTTGCAAAGATCAGCCGCAGTTGCT-TCTTGGAATGCCTTCTTTGTCTTGTATTTTG 213022 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | |||||| | || || || ||||| ||||| || ||||| Sbjct 213021 GCCTTCACGTTCTCGATAGTGTCGCTAGCCTCAACCTCCAGAGTGATGGTCTTTCCGGTA 212962 Query 134691 AAAGTTTTAACGAAAATTT 134709 | || || |||||||||| Sbjct 212961 AGCGTCTTCACGAAAATTT 212943 >seq210 Length=19051 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| ||||||||||||||||| ||||| ||||| ||||| || || || ||| Sbjct 9035 CCAGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATCTTTGCC 8976 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | |||||| | || || || | ||| ||||| || ||||| | Sbjct 8975 TTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAAAGTGATGGTCTTGCCGGTAAGC 8916 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || |||||||||||||| Sbjct 8915 GTCTTCACGAAAATTTGCAT 8896 >seq1893 Length=1815 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGA-TCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTG 134632 || ||||| ||||||||||||||| || ||||| ||||| || || || || || ||| Sbjct 530 CCAGCAAAGATCAAACGCTGCTGACTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGC 589 Query 134633 TTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAA 134692 || || || | |||||| | || || || ||||| |||||||| ||||| | Sbjct 590 CTTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAG 649 Query 134693 AGTTTTAACGAAAATTTGCAT 134713 || || |||||||||||||| Sbjct 650 CGTCTTCACGAAAATTTGCAT 670 >seq839 Length=159509 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| |||| |||||||||||| ||||| ||||| || || || || || || | Sbjct 77849 CCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCT 77908 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | |||||| | || || || ||||| ||||| || ||||| | Sbjct 77909 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAGAGTGATGGTCTTGCCGGTGAGC 77968 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || || ||||||||||||||| Sbjct 77969 GTCTTGACGAAAATTTGCATT 77989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505354979959960