Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_027329.1 Length=87510 Score E Sequences producing significant alignments: (Bits) Value seq1544 89.7 3e-13 >seq1544 Length=2721 Score = 89.7 bits (98), Expect = 3e-13 Identities = 119/164 (73%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 86438 GGCCTCATCTATGGTGACTCTATCACGTTGGAACGTGCAAACGAAATCCTGAAGCGTTTG 86497 ||||| || || ||||| ||||| ||||||||||| | |||||||| | ||| || Sbjct 888 GGCCTGATTTACGGTGATAGCATCACTCTGGAACGTGCAGAACAAATCCTGCAACGTCTG 829 Query 86498 TATGAAATGGGTTTTGCAAGTTCT---AACGTAGTGTTTGGTGTAGGTTCTTACACTTAC 86554 || | ||| || ||| || ||| | ||||| |||||||| || ||||| ||| Sbjct 828 ATGGATAAGGGCTTC---AGTGCTGGTAACATCGTGTTCGGTGTAGGCTCGTACACCTAC 772 Query 86555 CAGTACATGACTCGTGACACCTTTGCATTTGCTGTCAAAGCAAC 86598 |||||||| ||||||||||| || | | ||| |||| || || Sbjct 771 CAGTACATCACTCGTGACACGTTCGGCATGGCTATCAAGGCTAC 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 279883753660863