Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_027337.1 Length=88403 Score E Sequences producing significant alignments: (Bits) Value seq1544 100 2e-16 >seq1544 Length=2721 Score = 100 bits (110), Expect = 2e-16 Identities = 131/178 (74%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 87391 CTGGATGAGCACATCGGCCTTATCTATGGTGACTCTATCACACTGGAACGTGCAAACGAA 87450 ||| || | | | ||||||| || || ||||| ||||| |||||||||||| | || Sbjct 903 CTGAATCAACGCGTCGGCCTGATTTACGGTGATAGCATCACTCTGGAACGTGCAGAACAA 844 Query 87451 ATCCTGAAGCGTCTGTATGAAATGGGTTTTGCAA-GCTC-TAACGTAGTGTTTGGCGTAG 87508 |||||| | |||||| || | ||| || || ||| |||| | ||||| || |||| Sbjct 843 ATCCTGCAACGTCTGATGGATAAGGGCTT--CAGTGCTGGTAACATCGTGTTCGGTGTAG 786 Query 87509 GTTCTTACACTTACCAGTACATGACTCGTGACACCTTTGCATTTGCTGTCAAAGCAAC 87566 | || ||||| ||||||||||| ||||||||||| || | | ||| |||| || || Sbjct 785 GCTCGTACACCTACCAGTACATCACTCGTGACACGTTCGGCATGGCTATCAAGGCTAC 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 282741114294892