Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_027360.1 Length=87603 Score E Sequences producing significant alignments: (Bits) Value seq1544 107 1e-18 >seq1544 Length=2721 Score = 107 bits (118), Expect = 1e-18 Identities = 125/165 (76%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 31231 GTTGCTTTGACAGCAAATGCAAAGGTGTCACGAGTCATGTACTGGTAAGTGTAAGAGCCT 31290 || || |||| ||| | | || ||||||||||| ||||||||||| ||||| |||||| Sbjct 728 GTAGCCTTGATAGCCATGCCGAACGTGTCACGAGTGATGTACTGGTAGGTGTACGAGCCT 787 Query 31291 ACACCAAACACTACGTTA-GAGC-TTGCAAAACCCATTTCATACAGACGCTTCAGGATTT 31348 ||||| ||||| | |||| ||| || || ||| | || |||||| | |||||||| Sbjct 788 ACACCGAACACGATGTTACCAGCACTG--AAGCCCTTATCCATCAGACGTTGCAGGATTT 845 Query 31349 CGTTTGCACGTTCCAGCGTGATAGAGTCACCATAGATAAGGCCGA 31393 | |||||||||||| ||||| ||||| || || ||||||| Sbjct 846 GTTCTGCACGTTCCAGAGTGATGCTATCACCGTAAATCAGGCCGA 890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 280181328732492