Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq1544 98.7 9e-16 >seq1544 Length=2721 Score = 98.7 bits (108), Expect = 9e-16 Identities = 109/142 (77%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 119291 GGCCTTATCTATGGTGACTCTATCACGCTGGAACGTGCAAACGAAATCCTGAAGCGTCTG 119350 ||||| || || ||||| ||||| |||||||||||| | |||||||| | |||||| Sbjct 888 GGCCTGATTTACGGTGATAGCATCACTCTGGAACGTGCAGAACAAATCCTGCAACGTCTG 829 Query 119351 TATGAAATGGGTTTTGCAA-GCTC-TAACGTAGTGTTTGGTGTAGGTTCTTACACTTACC 119408 || | ||| || || ||| |||| | ||||| |||||||| || ||||| |||| Sbjct 828 ATGGATAAGGGCTT--CAGTGCTGGTAACATCGTGTTCGGTGTAGGCTCGTACACCTACC 771 Query 119409 AGTACATGACTCGTGACACCTT 119430 ||||||| ||||||||||| || Sbjct 770 AGTACATCACTCGTGACACGTT 749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471201114456040