Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq269 86.0 8e-12 seq3041 82.4 1e-10 seq487 82.4 1e-10 seq280 82.4 1e-10 >seq269 Length=200655 Score = 86.0 bits (94), Expect = 8e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 111291 ||| || || || ||||| ||||| ||||| ||||||||| | || || | || Sbjct 149915 AAGCGCAATGGAGGCCAAGTTGCACACAGCGGTCTCATCCGGTGACGAATATTCAATGAT 149974 Query 111292 TTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351 ||| || || || || || | || || || ||||| || | || || |||| || Sbjct 149975 TTCGGTGCACAAATTTGAGCATTTTATGGTGCCCAAGTTTTGCTGATTTGACTTCCGATT 150034 Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411 |||||| |||||| | | |||||| ||||| || ||||||||||| || ||| || Sbjct 150035 GCACGCGTCCTTGAACAACATGTACGGCGTGCCGGTCTCCGTCTGCGAACTGATGATGCT 150094 Query 111412 CTTCCAAACATC 111423 |||||| || || Sbjct 150095 CTTCCACACTTC 150106 >seq3041 Length=1087 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || ||| ||||||||| |||||| ||||||||||||||| |||||| ||||| ||||| Sbjct 154 TCCTATGGTGTAGTGGCTATCACTCTGGACTTTGAATCCAGCAACCCCGGTTCGAATCCG 95 Query 145344 GGTAGGAGCT 145353 ||||||| || Sbjct 94 GGTAGGACCT 85 >seq487 Length=181883 Score = 82.4 bits (90), Expect = 1e-10 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 145289 TAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCAGGTAG 145348 |||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||| || || Sbjct 20817 TAGTGTAGTGGTGATCACATTGGACTTTGAATCCAATAACCCCGGTTCGAATCCGGGCAG 20876 Query 145349 GAGCT 145353 || || Sbjct 20877 GACCT 20881 >seq280 Length=416066 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || ||| ||||||||| |||||| ||||||||||||||| |||||| ||||| ||||| Sbjct 202999 TCCTATGGTGTAGTGGCTATCACTCTGGACTTTGAATCCAGCAACCCCGGTTCGAATCCG 202940 Query 145344 GGTAGGAGCT 145353 ||||||| || Sbjct 202939 GGTAGGACCT 202930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627978044200800