Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq93 113 1e-19 seq1557 111 5e-19 seq2872 109 2e-18 seq839 87.8 5e-12 seq279 86.0 2e-11 seq593 84.2 7e-11 >seq93 Length=214751 Score = 113 bits (124), Expect = 1e-19 Identities = 155/213 (73%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| |||||||| ||||| || ||||| || || || | | || || ||||||| Sbjct 184806 GACCAAG-TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTT 184864 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || ||||| || |||||||| || |||||||||||||| || || || || || |||| Sbjct 184865 CGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCT 184924 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || | || || || |||| | || || ||| || || | || | || | Sbjct 184925 GGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTTTCCACCTCCAAAGTGATCGTTT 184984 Query 140707 TT-CCGGTTAGTGTTTTTAC-AAAAATCTGCAT 140737 || ||||| ||||| || || |||||| ||||| Sbjct 184985 TTGCCGGTCAGTGTCTTCACGAAAAATTTGCAT 185017 >seq1557 Length=337913 Score = 111 bits (122), Expect = 5e-19 Identities = 152/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| |||||||| ||||| || ||||| || || || | | || || ||||||| Sbjct 14376 GACCAAG-TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTT 14318 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || ||||| || |||||||| || |||||||||||||| || || || || || |||| Sbjct 14317 CGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCT 14258 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || | || || || |||| | || || || || || | || | || | Sbjct 14257 GGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACATCCAAAGTGATCGTTT 14198 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| ||||| || || ||||| ||||| Sbjct 14197 TGCCGGTCAGTGTCTTCACGAAAATTTGCAT 14167 >seq2872 Length=49360 Score = 109 bits (120), Expect = 2e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 140535 TGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGT 140594 |||||||| ||||| || ||||| || || || | | || || |||||||| || ||| Sbjct 1923 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGT 1864 Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || |||||||| || |||||||||||||| || || || || || ||||| || || Sbjct 1863 TTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTC 1804 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || || || |||| | || || || || || | || | || || ||||| Sbjct 1803 GTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGTC 1744 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || ||||| ||||| Sbjct 1743 AGTGTCTTCACGAAAATTTGCAT 1721 Score = 95.1 bits (104), Expect = 4e-14 Identities = 98/127 (77%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| |||||||| ||||| || ||||| || || || | | || || ||||||| Sbjct 2895 GACCAAG-TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTT 2837 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || ||||| || |||||||| || |||||||||||||| || || || || || |||| Sbjct 2836 CGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCT 2777 Query 140647 GAATTTT 140653 | || || Sbjct 2776 GGATCTT 2770 >seq839 Length=159509 Score = 87.8 bits (96), Expect = 5e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || |||||||| ||||| ||||||||||| ||||| || || || ||||| || || ||| Sbjct 77849 CCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCT 77908 Query 140658 TTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || || || || || | || | ||| || || || || || | ||||| ||||| || Sbjct 77909 TTCACGTTCTCGATGGTGTC-GCTGGCCTCGACCTCCAGAGTGATGGTCTTGCCGGTGAG 77967 Query 140717 TGTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 77968 CGTCTTGACGAAAATTTGCATT 77989 >seq279 Length=200696 Score = 86.0 bits (94), Expect = 2e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 349520 AAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCT 349579 ||||||||| | | || || | || | |||||| | || ||||||||||||||||| Sbjct 87086 AAACAATTTGCAGCTGAGGAGGTCTCTGCCATGGTTCTGGTGAAAATGAAGGAAATTGCG 87027 Query 349580 GAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAAT 349639 || | ||| | || | ||| | |||| ||| | || || || || || || ||| Sbjct 87026 GAGTCCTATCTCGGCCACGAAGTCAAGCATGCCGTTGTCACCGTTCCGGCTTACTTCAAT 86967 Query 349640 GATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGA 349699 || || || || || || || ||||| || ||| || || | || ||| | || Sbjct 86966 GACGCTCAACGGCAAGCCACGAAGGATGCCGGAGTCATCGCCGGTCTGAACGTTGTGAGG 86907 Query 349700 ATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA 349746 || || || || || || ||||| |||||||| ||||| || || || Sbjct 86906 ATAATCAACGAGCCGACGGCTGCTGCAATTGCTTATGGCCTGGACAA 86860 >seq593 Length=9788 Score = 84.2 bits (92), Expect = 7e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 140532 AGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGT 140591 ||||||||||| ||||| || ||||| || || || | || | | || ||||| || Sbjct 7142 AGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGTCAAAGCAAGACCGTCTTCGAGC 7083 Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 |||||||| |||||||| | || |||||||||| ||||| | || || ||||| || Sbjct 7082 TGTTTTCCGGCAAAGATCAAACTCTGCTGATCAGACGGAATGCGCTCCTTGTCCTGGATC 7023 Query 140652 TTAGCTTTTACATT 140665 || || || || || Sbjct 7022 TTTGCCTTCACTTT 7009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515120966224019