Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq269 107 2e-18 seq508 95.1 1e-14 >seq269 Length=200655 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| ||||||||| || ||||| ||||| ||| || |||||||| |||||| Sbjct 149925 GAGGCCAAGTTGCACACAGCGGTCTCATCCGGTGACGAATATTCAATGATTTCGGTGCAC 149984 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 ||||| || | || |||||||| | ||| | ||| || |||| || || |||||| Sbjct 149985 AAATTTGAGCATTTTATGGTGCCCAAGTTTTGCTGATTTGACTTCCGATTGCACGCGTCC 150044 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||| | ||||||||||||| |||||||| Sbjct 150045 TTGAACAACATGTACGGCGTGCCGGTCTC 150073 Score = 86.0 bits (94), Expect = 7e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 19799 GAGACCGGCACACCGTACATGTGCTACAAGGACGCC-GCGAACGCCAAGTCAAATCAGAA 19857 ||||||||||| |||||||||| | ||||||||| || | || |||||||||||| | Sbjct 150073 GAGACCGGCACGCCGTACATGTTGTTCAAGGACGCGTGCAATCGG-AAGTCAAATCAGCA 150015 Query 19858 GAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCC 19917 ||| | ||| | || || | || || |||| || |||||||| || ||| || Sbjct 150014 AAACTTGGGCACCATAAAATGCTCAAATTTGTGCACCGAAATCATTGAATATTCGTCACC 149955 Query 19918 GGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948 ||| ||||| || ||||| || |||| ||| Sbjct 149954 GGATGAGACCGCTGTGTGCAACTTGGCCTCC 149924 Score = 82.4 bits (90), Expect = 8e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 20609 CCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATC 20668 || ||| || |||||||| | |||||||| || |||||||| || || ||| || | Sbjct 148744 CCGCAGCACATCAAGGACCTGTACAGGACGGTGTGGGAAATTCCGCAAAAGGATATTCTG 148685 Query 20669 GACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATG 20728 || ||||| ||||| || | ||| | ||| ||||| ||| ||||| || | ||| Sbjct 148684 GAAATGGCTGCCGACCGTGCCGCGTTCATTGACCAAAGCCAATCGCTGAACATTCACATT 148625 Query 20729 GAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGG 20776 | | | |||| || || |||||||||||||| | |||| |||| Sbjct 148624 GCGCAGCCGAATTATGCAAAACTGAGCTCCATGCACTTCTACGCCTGG 148577 >seq508 Length=11071 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/147 (76%), Gaps = 5/147 (3%) Strand=Plus/Plus Query 20666 ATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTC 20725 ||||||||||| ||||| || ||||| | ||||||||||||| |||||||| | ||| Sbjct 2091 ATCGACATGGCCGCCGAGCGTGGCGCGTTCATCGACCAGTCCGCCTCGCTCAACCTGTTC 2150 Query 20726 ATGGAGAATCCGAGCCT-GGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGG 20784 ||||| | |||| | | |||| | || ||||||| | ||||||| |||| | |||| Sbjct 2151 ATGGAAAGCCCGAACATCGGCG-CGATGTCCTCCATGTACATGTACGCCTGGAAGCAGGG 2209 Query 20785 GCTCAAGACGGGCATGTACTATCTGCG 20811 ||||||| || ||||| ||||| Sbjct 2210 CATCAAGAC---CACCTACTACCTGCG 2233 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 78211 GTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAGACTCGGG 78270 ||||||| |||| |||||| |||||| || ||| |||| | | | | ||||| Sbjct 2218 GTCTTGATGCCCTGCTTCCAGGCGTACATGTACATGGAGGACATCGCGCCGATGTTCGGG 2159 Query 78271 TTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCC 78330 | |||||||| | ||||||||| ||||||||||||| |||| || || ||||| ||| Sbjct 2158 CTTTCCATGAACAGGTTGAGCGAGGCGGACTGGTCGATGAACGCGCCACGCTCGGCGGCC 2099 Query 78331 ATGTCGATGACCGA 78344 |||||||| | ||| Sbjct 2098 ATGTCGATCAGCGA 2085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548477674863120