Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq152 87.8 2e-12 >seq152 Length=21424 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/164 (73%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 152027 GCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 ||||||| ||||| || | || | |||||||| ||| || || || ||||||| Sbjct 17123 GCGTGAAAATGTAACGTGGCGAAGCTGAGTCCTTGCCGCCTTGAAGTCGAGTACCAAACT 17064 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | ||| |||| || || || | |||||||| || || |||||||| |||||||||| Sbjct 17063 GACCAATGGGCAGCAGCAGATTTATGTTGTTGGAACCAACAAAATTCTGTGCCAAATTCA 17004 Query 152147 CAATCGTGCCCTGCAG--ACTCGCTTCACCGTGGTGATACGCCG 152188 | |||||| | ||| ||| ||| | ||||||||||| |||| Sbjct 17003 CTATCGTGGACATCAGCGACT-GCTCC-CCGTGGTGATAAGCCG 16962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547168987305400