Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1709 125 8e-24 seq839 125 8e-24 seq210 125 8e-24 seq1893 123 3e-23 seq2872 116 4e-21 seq1557 114 1e-20 seq93 111 2e-19 seq593 93.3 5e-14 seq269 93.3 5e-14 seq2298 82.4 9e-11 >seq1709 Length=109515 Score = 125 bits (138), Expect = 8e-24 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||| || || ||||||||||||||||| || || ||||| ||||||||| | Sbjct 18089 ATCATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACCATCACTCTGGAGGTTGAGGCC 18148 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | || | ||| | ||| ||||||| || || |||||||||||||| || || || || Sbjct 18149 AGCGACACCATCGAAAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCGGAT 18208 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||||||| | || ||||| ||| || Sbjct 18209 CAGCAGCGTTTGATCTTTGCCGGTCAG 18235 Score = 114 bits (126), Expect = 1e-20 Identities = 112/143 (78%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA-GTCAG 27463 ||||||||| || ||||||||||| ||||| || || || ||||| |||||||| | | Sbjct 13862 AATGCAAATTTTCGTCAAGACGCTCACCGGAAAAACCATCACTCTGGAGGTTGAAGCCTA 13803 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 | || | ||| | ||| ||||||| || || |||||||||||||| || || || || | Sbjct 13802 GCGACACCATCGAAAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCGGATC 13743 Query 27524 AGCAGCGTCTAATTTTTGCTGGT 27546 |||||||| | || ||||| ||| Sbjct 13742 AGCAGCGTTTGATCTTTGCCGGT 13720 >seq839 Length=159509 Score = 125 bits (138), Expect = 8e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || ||||||||||| ||||||||||| || ||||| ||||| ||| | | Sbjct 77989 AATGCAAATTTTCGTCAAGACGCTCACCGGCAAGACCATCACTCTGGAGGTCGAGGCCAG 77930 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || |||| || || || |||||||||||||| ||||| || || || Sbjct 77929 CGACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGATCA 77870 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 ||||||||| || ||||| ||| Sbjct 77869 GCAGCGTCTGATCTTTGCCGGT 77848 >seq210 Length=19051 Score = 125 bits (138), Expect = 8e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||| || || |||||||||||||||||||| || ||| | ||||||||| | Sbjct 8893 ATCATGCAAATTTTCGTGAAGACGCTTACCGGCAAGACCATCACTTTGGAGGTTGAGGCC 8952 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | || | ||| | ||| ||||||| || || |||||||| ||||| || || || || Sbjct 8953 AGCGACACCATCGAAAACGTGAAGGCAAAGATCCAGGACAAAGAGGGCATCCCGCCGGAT 9012 Query 27523 CAGCAGCGTCTAATTTTTGCTGGT 27546 ||||||||| | || ||||||||| Sbjct 9013 CAGCAGCGTTTGATCTTTGCTGGT 9036 >seq1893 Length=1815 Score = 123 bits (136), Expect = 3e-23 Identities = 115/145 (79%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||| || || ||||||||||||||||| || || ||||| ||||||||| | Sbjct 673 ATCATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACCATCACTCTGGAGGTTGAGGCC 614 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA- 27521 | || | ||| | ||| ||||||| || || |||||||||||||| || || || || Sbjct 613 AGCGACACCATCGAAAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCGGAG 554 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGT 27546 ||||||||| | || ||||||||| Sbjct 553 TCAGCAGCGTTTGATCTTTGCTGGT 529 >seq2872 Length=49360 Score = 116 bits (128), Expect = 4e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| || |||||||| || || ||| | ||||| ||| || | Sbjct 1721 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGAGGTGGAG--AGTT 1778 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | ||| || ||||| | || || |||||||||||||| || || || || | Sbjct 1779 CGGACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATC 1838 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||| || || || ||||| || || || ||||| |||| || || | || ||||| | Sbjct 1839 AGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACA 1898 Query 27584 ATGTCCAAAAGGAATCCACTCTTCA 27608 | | || ||||| ||||||||||| Sbjct 1899 ACATTCAGAAGGAGTCCACTCTTCA 1923 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || || ||||| || || || ||||| || || Sbjct 2770 AAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAGCAACGGCTGATCTTTGCCGGCAAA 2829 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || ||||| |||| || || | || ||||| || | || ||||| ||||||||||| Sbjct 2830 CAGCTCGAAGATGGCCGCACGATGGCCGACTACAACATTCAGAAGGAGTCCACTCTTCAC 2889 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| | || || || || || Sbjct 2890 TTGGTCCTTCGCCTCCGGGGCGG 2912 >seq1557 Length=337913 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| || |||||||| || || ||| | || || ||| || | Sbjct 14167 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGATGTGGAG--AGTT 14224 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | ||| || ||||| | || || |||||||||||||| || || || || | Sbjct 14225 CGGACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATC 14284 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||| || || || ||||| || || || ||||| |||| || || | || ||||| | Sbjct 14285 AGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACA 14344 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || ||||| ||||||||||| | ||| | || || || || || Sbjct 14345 ACATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTCCGGGGCGG 14393 >seq93 Length=214751 Score = 111 bits (122), Expect = 2e-19 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27406 ATGCAAATCTTT-GTCAAGACGCTTACCGGCAAGA-CTATTACTCTTGAGGTTGA--GTC 27461 |||||||| ||| || ||||| || |||||||| | | || ||| | ||||| || || Sbjct 185017 ATGCAAATTTTTCGTGAAGACACTGACCGGCAAAAACGATCACTTTGGAGGTGGAAAGTT 184958 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 || | || ||| || ||||| | || || |||||||||||||| || || || || Sbjct 184957 CGGACACAG--TTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGA 184900 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| || || || ||||| || || || ||||| |||| || || | || ||||| Sbjct 184899 TCAGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTA 184840 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| ||||||||||| | ||| | || || || || || Sbjct 184839 CAACATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTCCGGGGCGG 184789 >seq593 Length=9788 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 ||||||| || || |||||||||||| | ||||| | || |||||| || | || |||| Sbjct 7013 TGAAGGCAAAGATCCAGGACAAGGAGCGCATTCCGTCTGATCAGCAGAGTTTGATCTTTG 7072 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 | || || || ||||| || | || | | | | ||||| || | || ||||| |||| Sbjct 7073 CCGGAAAACAGCTCGAAGACGGTCTTGCTTTGACCGACTACAACATTCAGAAGGAGTCCA 7132 Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| | | ||||| || ||||| Sbjct 7133 CTCTTCATCTCTTGTCTCGTCTCCGTGGTGG 7163 >seq269 Length=200655 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 ||| |||| |||||||| || ||| || | | | | || | |||||| ||||| Sbjct 149924 GGAGGCCAAGTTGCACACAGCGGTCTCATCCGGTGACGAATATTCAATGATTTCGGTGCA 149983 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 |||||| || | || || || |||| ||||| ||| |||||||| ||||| ||||| Sbjct 149984 CAAATTTGAGCATTTTATGGTGCCCAAGTTTTGCTGATTTGACTTCCGATTGCACGCGTC 150043 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATG 81075 |||| | |||||||||| || |||||||| ||| || ||| |||| Sbjct 150044 CTTGAACAACATGTACGGCGTGCCGGTCTCCGTCTGCGAACTGATGATG 150092 >seq2298 Length=272061 Score = 82.4 bits (90), Expect = 9e-11 Identities = 133/190 (70%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 27410 AAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATA 27469 |||| || || |||||||||||||| ||||| || ||||| ||||||||| | | || | Sbjct 212943 AAATTTTCGTGAAGACGCTTACCGGAAAGACCATCACTCTGGAGGTTGAGGCTAGCGACA 213002 Query 27470 GCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGC 27529 || | || ||||||| ||||| || ||||| || || ||||| | | || | || Sbjct 213003 CTATCGAGAACGTGAAGGCCAAAATACAAGACAAAGAAGGCATTCCAAGA-AGCAACTGC 213061 Query 27530 GTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCC 27589 | || || ||||| | || || || || || || | | | | ||||| || | | Sbjct 213062 GGCTGATCTTTGCAAGGAAACAGCTTGAAGACATGCGAAGCATGGTGGACTACAACATTC 213121 Query 27590 AAAAGGAATC 27599 ||||||| || Sbjct 213122 AAAAGGAGTC 213131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570261403207760