Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1557 120 2e-22 seq2872 111 1e-19 seq93 107 1e-18 seq1709 86.0 4e-12 >seq1557 Length=337913 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | ||||| || |||||| |||||| |||||||| || || | Sbjct 14394 GCCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGC 14335 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | ||||| || ||||| |||||||| || | || || || || ||||| Sbjct 14334 CATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGG 14275 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || || || ||| | || |||||| ||||||| Sbjct 14274 GATGCCCTCCTTGTCCTGGATC-TTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCA 14216 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| || |||||||| ||||| | || ||||| ||||| |||||| Sbjct 14215 CATCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCATG 14166 >seq2872 Length=49360 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || |||||| |||||| |||||||| || || | | || || | ||||| || ||| Sbjct 1923 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGT 1864 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | || || || || ||||| | ||||||||||| |||| || Sbjct 1863 TTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATC-TT 1805 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | || |||||| |||||||| |||| || |||||||| ||||| Sbjct 1804 CGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGT 1745 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | || ||||| ||||| |||||| Sbjct 1744 CAGTGTCTTCACGAAAATTTGCATG 1720 >seq93 Length=214751 Score = 107 bits (118), Expect = 1e-18 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | ||||| || |||||| |||||| |||||||| || || | Sbjct 184788 GCCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGC 184847 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | ||||| || ||||| |||||||| || | || || || || ||||| Sbjct 184848 CATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGG 184907 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || || || ||| | || |||||| || |||| Sbjct 184908 GATGCCCTCCTTGTCCTGGATC-TTCGTCTTCACGTTGTCAACTGTGTCCGAACTTTCCA 184966 Query 34658 CTTCCACGGTTATCG-TTTTACCGGTTAACGTTTTCAC-AAAAATCTGCATG 34707 | |||| || |||| |||| ||||| | || ||||| |||||| |||||| Sbjct 184967 CCTCCAAAGTGATCGTTTTTGCCGGTCAGTGTCTTCACGAAAAATTTGCATG 185018 >seq1709 Length=109515 Score = 86.0 bits (94), Expect = 4e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 34566 ACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTG 34625 ||||||||| || |||||||| || |||||||| | ||||||||||| |||| |||| Sbjct 18232 ACCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATC-TTTG 18174 Query 34626 TTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTA 34684 || ||| | || ||||| | ||| || |||| || || ||||| ||||| | Sbjct 18173 CCTTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAA 18114 Query 34685 ACGTTTTCACAAAAATCTGCATGTTG 34710 ||| ||||| ||||| |||||| || Sbjct 18113 GCGTCTTCACGAAAATTTGCATGATG 18088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314703236773409