Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1557 93.3 4e-14 seq93 89.7 4e-13 seq2872 82.4 7e-11 >seq1557 Length=337913 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || ||||||||||| | || ||| | || ||||| || Sbjct 14166 CATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGATGTGGAGAGTTC 14225 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | |||| | || || || || || ||||| || ||||| || || ||||| Sbjct 14226 GGACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCA 14285 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || | || | ||||||||||| | ||||| | || | |||| ||||| Sbjct 14286 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAA 14345 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| || | || ||||| | || | ||||| ||||| Sbjct 14346 CATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTCCGGGGCGGCAT 14396 >seq93 Length=214751 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTT-GTAAAAACTCTGACCGGCAAGT-CTATTACTCTTGAAGTGGAACCG 27044 |||||| || ||| || || || ||||||||||| | || ||| | || |||||| Sbjct 185018 CATGCAAATTTTTCGTGAAGACACTGACCGGCAAAAACGATCACTTTGGAGGTGGAAAGT 184959 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||| | |||| | || || || || || ||||| || ||||| || || ||| Sbjct 184958 TCGGACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGAT 184899 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || || | || | ||||||||||| | ||||| | || | |||| ||| Sbjct 184898 CAGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTAC 184839 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| |||||||| || | || ||||| | || | ||||| ||||| Sbjct 184838 AACATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTCCGGGGCGGCAT 184786 >seq2872 Length=49360 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || ||||||||||| | || ||| | || ||||| || Sbjct 1720 CATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGAGGTGGAGAGTTC 1779 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | |||| | || || || || || ||||| || ||||| || || ||||| Sbjct 1780 GGACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCA 1839 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || | || | ||||||||||| | ||||| | || | |||| ||||| Sbjct 1840 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAA 1899 Query 27167 CATTCAAAAGGAGTCGAC 27184 |||||| |||||||| || Sbjct 1900 CATTCAGAAGGAGTCCAC 1917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434881035072960